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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.
Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson NJ, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM. Galdzicki M, et al. Among authors: bartley ba. Nat Biotechnol. 2014 Jun;32(6):545-50. doi: 10.1038/nbt.2891. Epub 2014 Jun 6. Nat Biotechnol. 2014. PMID: 24911500
In-Fusion BioBrick assembly and re-engineering.
Sleight SC, Bartley BA, Lieviant JA, Sauro HM. Sleight SC, et al. Among authors: bartley ba. Nucleic Acids Res. 2010 May;38(8):2624-36. doi: 10.1093/nar/gkq179. Epub 2010 Apr 12. Nucleic Acids Res. 2010. PMID: 20385581 Free PMC article.
Computational tools for metabolic engineering.
Copeland WB, Bartley BA, Chandran D, Galdzicki M, Kim KH, Sleight SC, Maranas CD, Sauro HM. Copeland WB, et al. Among authors: bartley ba. Metab Eng. 2012 May;14(3):270-80. doi: 10.1016/j.ymben.2012.03.001. Metab Eng. 2012. PMID: 22629572 Free PMC article. Review.
Controlling E. coli Gene Expression Noise.
Kim KH, Choi K, Bartley B, Sauro HM. Kim KH, et al. IEEE Trans Biomed Circuits Syst. 2015 Aug;9(4):497-504. doi: 10.1109/TBCAS.2015.2461135. Epub 2015 Sep 10. IEEE Trans Biomed Circuits Syst. 2015. PMID: 26372647
Synthetic Biology Open Language (SBOL) Version 2.0.0.
Bartley B, Beal J, Clancy K, Misirli G, Roehner N, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang Z, Gennari JH, Myers C, Wipat A, Sauro H. Bartley B, et al. J Integr Bioinform. 2015 Sep 4;12(2):272. doi: 10.2390/biecoll-jib-2015-272. J Integr Bioinform. 2015. PMID: 26528570
Sharing Structure and Function in Biological Design with SBOL 2.0.
Roehner N, Beal J, Clancy K, Bartley B, Misirli G, Grünberg R, Oberortner E, Pocock M, Bissell M, Madsen C, Nguyen T, Zhang M, Zhang Z, Zundel Z, Densmore D, Gennari JH, Wipat A, Sauro HM, Myers CJ. Roehner N, et al. ACS Synth Biol. 2016 Jun 17;5(6):498-506. doi: 10.1021/acssynbio.5b00215. Epub 2016 May 4. ACS Synth Biol. 2016. PMID: 27111421
Synthetic Biology Open Language (SBOL) Version 2.1.0.
Beal J, Cox RS, Grünberg R, McLaughlin J, Nguyen T, Bartley B, Bissell M, Choi K, Clancy K, Macklin C, Madsen C, Misirli G, Oberortner E, Pocock M, Roehner N, Samineni M, Zhang M, Zhang Z, Zundel Z, Gennari J, Myers C, Sauro H, Wipat A. Beal J, et al. J Integr Bioinform. 2016 Dec 18;13(3):291. doi: 10.2390/biecoll-jib-2016-291. J Integr Bioinform. 2016. PMID: 28187407
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.
Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novère N, Pocock M, Sauro H, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A. Cox RS, et al. J Integr Bioinform. 2018 Mar 19;15(1):20170074. doi: 10.1515/jib-2017-0074. J Integr Bioinform. 2018. PMID: 29549707 Free PMC article.
36 results