Hallinan J - Search Results

1

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson NJ, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM. Galdzicki M, et al. Among authors: hallinan j. Nat Biotechnol. 2014 Jun;32(6):545-50. doi: 10.1038/nbt.2891. Epub 2014 Jun 6. Nat Biotechnol. 2014. PMID: 24911500

2

Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits.

Hallinan JS, Misirli G, Wipat A. Hallinan JS, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2010;2010:768-74. doi: 10.1109/IEMBS.2010.5626353. Annu Int Conf IEEE Eng Med Biol Soc. 2010. PMID: 21095906

3

Model annotation for synthetic biology: automating model to nucleotide sequence conversion.

Misirli G, Hallinan JS, Yu T, Lawson JR, Wimalaratne SM, Cooling MT, Wipat A. Misirli G, et al. Bioinformatics. 2011 Apr 1;27(7):973-9. doi: 10.1093/bioinformatics/btr048. Epub 2011 Feb 4. Bioinformatics. 2011. PMID: 21296753 Free PMC article.

4

BacillOndex: an integrated data resource for systems and synthetic biology.

Misirli G, Wipat A, Mullen J, James K, Pocock M, Smith W, Allenby N, Hallinan JS. Misirli G, et al. Among authors: hallinan js. J Integr Bioinform. 2013 Apr 10;10(2):224. doi: 10.2390/biecoll-jib-2013-224. J Integr Bioinform. 2013. PMID: 23571273

5

Data Integration and Mining for Synthetic Biology Design.

Mısırlı G, Hallinan J, Pocock M, Lord P, McLaughlin JA, Sauro H, Wipat A. Mısırlı G, et al. Among authors: hallinan j. ACS Synth Biol. 2016 Oct 21;5(10):1086-1097. doi: 10.1021/acssynbio.5b00295. Epub 2016 Jun 20. ACS Synth Biol. 2016. PMID: 27110921 Free article.

6

The SBOL Stack: A Platform for Storing, Publishing, and Sharing Synthetic Biology Designs.

Madsen C, McLaughlin JA, Mısırlı G, Pocock M, Flanagan K, Hallinan J, Wipat A. Madsen C, et al. Among authors: hallinan j. ACS Synth Biol. 2016 Jun 17;5(6):487-97. doi: 10.1021/acssynbio.5b00210. Epub 2016 Jun 8. ACS Synth Biol. 2016. PMID: 27268205 Free article.

7

Is newer better?--evaluating the effects of data curation on integrated analyses in Saccharomyces cerevisiae.

James K, Wipat A, Hallinan J. James K, et al. Among authors: hallinan j. Integr Biol (Camb). 2012 Jul;4(7):715-27. doi: 10.1039/c2ib00123c. Epub 2012 Apr 23. Integr Biol (Camb). 2012. PMID: 22526920

8

Microbase2.0: a generic framework for computationally intensive bioinformatics workflows in the cloud.

Flanagan K, Nakjang S, Hallinan J, Harwood C, Hirt RP, Pocock MR, Wipat A. Flanagan K, et al. Among authors: hallinan j. J Integr Bioinform. 2012 Sep 24;9(2):212. doi: 10.2390/biecoll-jib-2012-212. J Integr Bioinform. 2012. PMID: 23001322

9

Network approaches to the functional analysis of microbial proteins.

Hallinan JS, James K, Wipat A. Hallinan JS, et al. Adv Microb Physiol. 2011;59:101-33. doi: 10.1016/B978-0-12-387661-4.00005-7. Adv Microb Physiol. 2011. PMID: 22114841 Review.

10

Standard virtual biological parts: a repository of modular modeling components for synthetic biology.

Cooling MT, Rouilly V, Misirli G, Lawson J, Yu T, Hallinan J, Wipat A. Cooling MT, et al. Among authors: hallinan j. Bioinformatics. 2010 Apr 1;26(7):925-31. doi: 10.1093/bioinformatics/btq063. Epub 2010 Feb 16. Bioinformatics. 2010. PMID: 20160009

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