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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.
Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, Endy D, Grünberg R, Hallinan J, Hillson NJ, Johnson JD, Kuchinsky A, Lux M, Misirli G, Peccoud J, Plahar HA, Sirin E, Stan GB, Villalobos A, Wipat A, Gennari JH, Myers CJ, Sauro HM. Galdzicki M, et al. Among authors: wipat a. Nat Biotechnol. 2014 Jun;32(6):545-50. doi: 10.1038/nbt.2891. Epub 2014 Jun 6. Nat Biotechnol. 2014. PMID: 24911500
Taverna: a tool for the composition and enactment of bioinformatics workflows.
Oinn T, Addis M, Ferris J, Marvin D, Senger M, Greenwood M, Carver T, Glover K, Pocock MR, Wipat A, Li P. Oinn T, et al. Among authors: wipat a. Bioinformatics. 2004 Nov 22;20(17):3045-54. doi: 10.1093/bioinformatics/bth361. Epub 2004 Jun 16. Bioinformatics. 2004. PMID: 15201187
The minimum information about a genome sequence (MIGS) specification.
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A. Field D, et al. Among authors: wipat a. Nat Biotechnol. 2008 May;26(5):541-7. doi: 10.1038/nbt1360. Nat Biotechnol. 2008. PMID: 18464787 Free PMC article.
Ontology for genome comparison and genomic rearrangements.
Flanagan K, Stevens R, Pocock M, Lee P, Wipat A. Flanagan K, et al. Among authors: wipat a. Comp Funct Genomics. 2004;5(6-7):537-44. doi: 10.1002/cfg.436. Comp Funct Genomics. 2004. PMID: 18629137 Free PMC article.
Cellular senescence: unravelling complexity.
Passos JF, Simillion C, Hallinan J, Wipat A, von Zglinicki T. Passos JF, et al. Among authors: wipat a. Age (Dordr). 2009 Dec;31(4):353-63. doi: 10.1007/s11357-009-9108-1. Age (Dordr). 2009. PMID: 19618294 Free PMC article. Review.
Saint: a lightweight integration environment for model annotation.
Lister AL, Pocock M, Taschuk M, Wipat A. Lister AL, et al. Among authors: wipat a. Bioinformatics. 2009 Nov 15;25(22):3026-7. doi: 10.1093/bioinformatics/btp523. Epub 2009 Sep 4. Bioinformatics. 2009. PMID: 19734151 Free PMC article.
Feedback between p21 and reactive oxygen production is necessary for cell senescence.
Passos JF, Nelson G, Wang C, Richter T, Simillion C, Proctor CJ, Miwa S, Olijslagers S, Hallinan J, Wipat A, Saretzki G, Rudolph KL, Kirkwood TB, von Zglinicki T. Passos JF, et al. Among authors: wipat a. Mol Syst Biol. 2010;6:347. doi: 10.1038/msb.2010.5. Epub 2010 Feb 16. Mol Syst Biol. 2010. PMID: 20160708 Free PMC article.
121 results