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OutbreakTools: a new platform for disease outbreak analysis using the R software.
Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N. Jombart T, et al. Among authors: cori a. Epidemics. 2014 Jun;7(100):28-34. doi: 10.1016/j.epidem.2014.04.003. Epub 2014 Apr 18. Epidemics. 2014. PMID: 24928667 Free PMC article.
How effectively can HIV phylogenies be used to measure heritability?
Shirreff G, Alizon S, Cori A, Günthard HF, Laeyendecker O, van Sighem A, Bezemer D, Fraser C. Shirreff G, et al. Among authors: cori a. Evol Med Public Health. 2013 Jan;2013(1):209-24. doi: 10.1093/emph/eot019. Epub 2013 Sep 13. Evol Med Public Health. 2013. PMID: 24481201 Free PMC article.
Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting.
Tong SY, Holden MT, Nickerson EK, Cooper BS, Köser CU, Cori A, Jombart T, Cauchemez S, Fraser C, Wuthiekanun V, Thaipadungpanit J, Hongsuwan M, Day NP, Limmathurotsakul D, Parkhill J, Peacock SJ. Tong SY, et al. Among authors: cori a. Genome Res. 2015 Jan;25(1):111-8. doi: 10.1101/gr.174730.114. Epub 2014 Dec 9. Genome Res. 2015. PMID: 25491771 Free PMC article.
Estimating Potential Incidence of MERS-CoV Associated with Hajj Pilgrims to Saudi Arabia, 2014.
Lessler J, Rodriguez-Barraquer I, Cummings DA, Garske T, Van Kerkhove M, Mills H, Truelove S, Hakeem R, Albarrak A, Ferguson NM; MERS-CoV Scenario Modeling Working Group; MERS-CoV Scenario Modeling Working Group. Lessler J, et al. PLoS Curr. 2014 Nov 24;6:ecurrents.outbreaks.c5c9c9abd636164a9b6fd4dbda974369. doi: 10.1371/currents.outbreaks.c5c9c9abd636164a9b6fd4dbda974369. PLoS Curr. 2014. PMID: 25685624 Free PMC article.
HIV treatment-as-prevention research: taking the right road at the crossroads.
Hayes R, Fidler S, Cori A, Fraser C, Floyd S, Ayles H, Beyers N, El-Sadr W; HPTN 071 (PopART) Study Team. Hayes R, et al. Among authors: cori a. PLoS Med. 2015 Mar 10;12(3):e1001800. doi: 10.1371/journal.pmed.1001800. eCollection 2015 Mar. PLoS Med. 2015. PMID: 25756285 Free PMC article.
Potential Biases in Estimating Absolute and Relative Case-Fatality Risks during Outbreaks.
Lipsitch M, Donnelly CA, Fraser C, Blake IM, Cori A, Dorigatti I, Ferguson NM, Garske T, Mills HL, Riley S, Van Kerkhove MD, Hernán MA. Lipsitch M, et al. Among authors: cori a. PLoS Negl Trop Dis. 2015 Jul 16;9(7):e0003846. doi: 10.1371/journal.pntd.0003846. eCollection 2015. PLoS Negl Trop Dis. 2015. PMID: 26181387 Free PMC article. Review.
The role of rapid diagnostics in managing Ebola epidemics.
Nouvellet P, Garske T, Mills HL, Nedjati-Gilani G, Hinsley W, Blake IM, Van Kerkhove MD, Cori A, Dorigatti I, Jombart T, Riley S, Fraser C, Donnelly CA, Ferguson NM. Nouvellet P, et al. Among authors: cori a. Nature. 2015 Dec 3;528(7580):S109-16. doi: 10.1038/nature16041. Nature. 2015. PMID: 26633764 Free PMC article.
204 results