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MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing.
BMC Bioinformatics. 2014 Jun 27;15:224. doi: 10.1186/1471-2105-15-224.
BMC Bioinformatics. 2014.
PMID: 24972667
Free PMC article.
CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data.
Sun Z, Evans J, Bhagwate A, Middha S, Bockol M, Yan H, Kocher JP.
Sun Z, et al.
BMC Genomics. 2014 Jun 3;15(1):423. doi: 10.1186/1471-2164-15-423.
BMC Genomics. 2014.
PMID: 24894665
Free PMC article.
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Recommendations for performance optimizations when using GATK3.8 and GATK4.
Heldenbrand JR, Baheti S, Bockol MA, Drucker TM, Hart SN, Hudson ME, Iyer RK, Kalmbach MT, Kendig KI, Klee EW, Mattson NR, Wieben ED, Wiepert M, Wildman DE, Mainzer LS.
Heldenbrand JR, et al. Among authors: bockol ma.
BMC Bioinformatics. 2019 Nov 8;20(1):557. doi: 10.1186/s12859-019-3169-7.
BMC Bioinformatics. 2019.
PMID: 31703611
Free PMC article.
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BBBomics-Human Blood Brain Barrier Transcriptomics Hub.
Kalari KR, Thompson KJ, Nair AA, Tang X, Bockol MA, Jhawar N, Swaminathan SK, Lowe VJ, Kandimalla KK.
Kalari KR, et al. Among authors: bockol ma.
Front Neurosci. 2016 Mar 1;10:71. doi: 10.3389/fnins.2016.00071. eCollection 2016.
Front Neurosci. 2016.
PMID: 26973449
Free PMC article.
No abstract available.
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Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4.
Heldenbrand JR, Baheti S, Bockol MA, Drucker TM, Hart SN, Hudson ME, Iyer RK, Kalmbach MT, Kendig KI, Klee EW, Mattson NR, Wieben ED, Wiepert M, Wildman DE, Mainzer LS.
Heldenbrand JR, et al. Among authors: bockol ma.
BMC Bioinformatics. 2019 Dec 17;20(1):722. doi: 10.1186/s12859-019-3277-4.
BMC Bioinformatics. 2019.
PMID: 31847808
Free PMC article.
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Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations.
Druliner BR, Wang P, Bae T, Baheti S, Slettedahl S, Mahoney D, Vasmatzis N, Xu H, Kim M, Bockol M, O'Brien D, Grill D, Warner N, Munoz-Gomez M, Kossick K, Johnson R, Mouchli M, Felmlee-Devine D, Washechek-Aletto J, Smyrk T, Oberg A, Wang J, Chia N, Abyzov A, Ahlquist D, Boardman LA.
Druliner BR, et al.
Sci Rep. 2018 Feb 16;8(1):3161. doi: 10.1038/s41598-018-21525-4.
Sci Rep. 2018.
PMID: 29453410
Free PMC article.
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Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy.
Kendig KI, Baheti S, Bockol MA, Drucker TM, Hart SN, Heldenbrand JR, Hernaez M, Hudson ME, Kalmbach MT, Klee EW, Mattson NR, Ross CA, Taschuk M, Wieben ED, Wiepert M, Wildman DE, Mainzer LS.
Kendig KI, et al. Among authors: bockol ma.
Front Genet. 2019 Aug 20;10:736. doi: 10.3389/fgene.2019.00736. eCollection 2019.
Front Genet. 2019.
PMID: 31481971
Free PMC article.
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