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Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic.
Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, Hendriksen RS, Price LB, Upadhyay BP, Shakya G, Fraser CM, Ravel J, Keim PS. Eppinger M, et al. Among authors: daugherty s. mBio. 2014 Nov 4;5(6):e01721. doi: 10.1128/mBio.01721-14. mBio. 2014. PMID: 25370488 Free PMC article.
Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.
Eppinger M, Daugherty S, Agrawal S, Galens K, Sengamalay N, Sadzewicz L, Tallon L, Cebula TA, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Fraser CM, Ravel J. Eppinger M, et al. Among authors: daugherty s. Genome Announc. 2013 Feb 28;1(2):e0013412. doi: 10.1128/genomeA.00134-12. Genome Announc. 2013. PMID: 23516226 Free PMC article.
Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States.
Sanjar F, Hazen TH, Shah SM, Koenig SS, Agrawal S, Daugherty S, Sadzewicz L, Tallon LJ, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Cebula TA, Ravel J, Fraser CM, Rasko DA, Eppinger M. Sanjar F, et al. Among authors: daugherty s. Genome Announc. 2014 Jan 9;2(1):e01120-13. doi: 10.1128/genomeA.01120-13. Genome Announc. 2014. PMID: 24407635 Free PMC article.
Whole-genome sequences of Bacillus subtilis and close relatives.
Earl AM, Eppinger M, Fricke WF, Rosovitz MJ, Rasko DA, Daugherty S, Losick R, Kolter R, Ravel J. Earl AM, et al. Among authors: daugherty s. J Bacteriol. 2012 May;194(9):2378-9. doi: 10.1128/JB.05675-11. J Bacteriol. 2012. PMID: 22493193 Free PMC article.
Genomic insights into the emerging human pathogen Mycobacterium massiliense.
Tettelin H, Sampaio EP, Daugherty SC, Hine E, Riley DR, Sadzewicz L, Sengamalay N, Shefchek K, Su Q, Tallon LJ, Conville P, Olivier KN, Holland SM, Fraser CM, Zelazny AM. Tettelin H, et al. J Bacteriol. 2012 Oct;194(19):5450. doi: 10.1128/JB.01200-12. J Bacteriol. 2012. PMID: 22965080 Free PMC article.
Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319.
Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, Grayburn S, Dhingra S, Lukyanchuk V, Ball B, Ul-Qamar R, Seibel J, Bremer E, Jahn D, Ravel J, Vary PS. Eppinger M, et al. Among authors: daugherty s. J Bacteriol. 2011 Aug;193(16):4199-213. doi: 10.1128/JB.00449-11. Epub 2011 Jun 24. J Bacteriol. 2011. PMID: 21705586 Free PMC article.
Genome sequences of 65 Helicobacter pylori strains isolated from asymptomatic individuals and patients with gastric cancer, peptic ulcer disease, or gastritis.
Blanchard TG, Czinn SJ, Correa P, Nakazawa T, Keelan M, Morningstar L, Santana-Cruz I, Maroo A, McCracken C, Shefchek K, Daugherty S, Song Y, Fraser CM, Fricke WF. Blanchard TG, et al. Among authors: daugherty s. Pathog Dis. 2013 Jul;68(2):39-43. doi: 10.1111/2049-632X.12045. Epub 2013 May 23. Pathog Dis. 2013. PMID: 23661595 Free PMC article.
An integrated genomic and transcriptomic survey of mucormycosis-causing fungi.
Chibucos MC, Soliman S, Gebremariam T, Lee H, Daugherty S, Orvis J, Shetty AC, Crabtree J, Hazen TH, Etienne KA, Kumari P, O'Connor TD, Rasko DA, Filler SG, Fraser CM, Lockhart SR, Skory CD, Ibrahim AS, Bruno VM. Chibucos MC, et al. Among authors: daugherty s. Nat Commun. 2016 Jul 22;7:12218. doi: 10.1038/ncomms12218. Nat Commun. 2016. PMID: 27447865 Free PMC article.
The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.
Galens K, Orvis J, Daugherty S, Creasy HH, Angiuoli S, White O, Wortman J, Mahurkar A, Giglio MG. Galens K, et al. Among authors: daugherty s. Stand Genomic Sci. 2011 Apr 29;4(2):244-51. doi: 10.4056/sigs.1223234. Epub 2011 Apr 25. Stand Genomic Sci. 2011. PMID: 21677861 Free PMC article.
High-level relatedness among Mycobacterium abscessus subsp. massiliense strains from widely separated outbreaks.
Tettelin H, Davidson RM, Agrawal S, Aitken ML, Shallom S, Hasan NA, Strong M, de Moura VC, De Groote MA, Duarte RS, Hine E, Parankush S, Su Q, Daugherty SC, Fraser CM, Brown-Elliott BA, Wallace RJ Jr, Holland SM, Sampaio EP, Olivier KN, Jackson M, Zelazny AM. Tettelin H, et al. Among authors: daugherty sc. Emerg Infect Dis. 2014 Mar;20(3):364-71. doi: 10.3201/eid2003.131106. Emerg Infect Dis. 2014. PMID: 24565502 Free PMC article.
351 results