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Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic.
Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, Hendriksen RS, Price LB, Upadhyay BP, Shakya G, Fraser CM, Ravel J, Keim PS. Eppinger M, et al. Among authors: fraser cm. mBio. 2014 Nov 4;5(6):e01721. doi: 10.1128/mBio.01721-14. mBio. 2014. PMID: 25370488 Free PMC article.
Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing.
Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P. Pearson T, et al. Among authors: fraser cm. Proc Natl Acad Sci U S A. 2004 Sep 14;101(37):13536-41. doi: 10.1073/pnas.0403844101. Epub 2004 Sep 3. Proc Natl Acad Sci U S A. 2004. PMID: 15347815 Free PMC article.
Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain.
Van Ert MN, Easterday WR, Simonson TS, U'Ren JM, Pearson T, Kenefic LJ, Busch JD, Huynh LY, Dukerich M, Trim CB, Beaudry J, Welty-Bernard A, Read T, Fraser CM, Ravel J, Keim P. Van Ert MN, et al. Among authors: fraser cm. J Clin Microbiol. 2007 Jan;45(1):47-53. doi: 10.1128/JCM.01233-06. Epub 2006 Nov 8. J Clin Microbiol. 2007. PMID: 17093023 Free PMC article.
Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.
Eppinger M, Daugherty S, Agrawal S, Galens K, Sengamalay N, Sadzewicz L, Tallon L, Cebula TA, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Fraser CM, Ravel J. Eppinger M, et al. Among authors: fraser cm. Genome Announc. 2013 Feb 28;1(2):e0013412. doi: 10.1128/genomeA.00134-12. Genome Announc. 2013. PMID: 23516226 Free PMC article.
Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States.
Sanjar F, Hazen TH, Shah SM, Koenig SS, Agrawal S, Daugherty S, Sadzewicz L, Tallon LJ, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Cebula TA, Ravel J, Fraser CM, Rasko DA, Eppinger M. Sanjar F, et al. Among authors: fraser cm. Genome Announc. 2014 Jan 9;2(1):e01120-13. doi: 10.1128/genomeA.01120-13. Genome Announc. 2014. PMID: 24407635 Free PMC article.
Genomics at the genus scale.
Ravel J, Fraser CM. Ravel J, et al. Among authors: fraser cm. Trends Microbiol. 2005 Mar;13(3):95-7. doi: 10.1016/j.tim.2005.01.004. Trends Microbiol. 2005. PMID: 15737726 No abstract available.
Genomic insights into the emerging human pathogen Mycobacterium massiliense.
Tettelin H, Sampaio EP, Daugherty SC, Hine E, Riley DR, Sadzewicz L, Sengamalay N, Shefchek K, Su Q, Tallon LJ, Conville P, Olivier KN, Holland SM, Fraser CM, Zelazny AM. Tettelin H, et al. Among authors: fraser cm. J Bacteriol. 2012 Oct;194(19):5450. doi: 10.1128/JB.01200-12. J Bacteriol. 2012. PMID: 22965080 Free PMC article.
337 results