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Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.
Chiu HS, Llobet-Navas D, Yang X, Chung WJ, Ambesi-Impiombato A, Iyer A, Kim HR, Seviour EG, Luo Z, Sehgal V, Moss T, Lu Y, Ram P, Silva J, Mills GB, Califano A, Sumazin P. Chiu HS, et al. Among authors: califano a. Genome Res. 2015 Feb;25(2):257-67. doi: 10.1101/gr.178194.114. Epub 2014 Nov 5. Genome Res. 2015. PMID: 25378249 Free PMC article.
Reverse engineering cellular networks.
Margolin AA, Wang K, Lim WK, Kustagi M, Nemenman I, Califano A. Margolin AA, et al. Among authors: califano a. Nat Protoc. 2006;1(2):662-71. doi: 10.1038/nprot.2006.106. Nat Protoc. 2006. PMID: 17406294
Identification of the human mature B cell miRNome.
Basso K, Sumazin P, Morozov P, Schneider C, Maute RL, Kitagawa Y, Mandelbaum J, Haddad J Jr, Chen CZ, Califano A, Dalla-Favera R. Basso K, et al. Among authors: califano a. Immunity. 2009 May;30(5):744-52. doi: 10.1016/j.immuni.2009.03.017. Epub 2009 May 14. Immunity. 2009. PMID: 19446474 Free PMC article.
BCL6 suppression of BCL2 via Miz1 and its disruption in diffuse large B cell lymphoma.
Saito M, Novak U, Piovan E, Basso K, Sumazin P, Schneider C, Crespo M, Shen Q, Bhagat G, Califano A, Chadburn A, Pasqualucci L, Dalla-Favera R. Saito M, et al. Among authors: califano a. Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11294-9. doi: 10.1073/pnas.0903854106. Epub 2009 Jun 23. Proc Natl Acad Sci U S A. 2009. PMID: 19549844 Free PMC article.
346 results