Yang X - Search Results

1

Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.

Chiu HS, Llobet-Navas D, Yang X, Chung WJ, Ambesi-Impiombato A, Iyer A, Kim HR, Seviour EG, Luo Z, Sehgal V, Moss T, Lu Y, Ram P, Silva J, Mills GB, Califano A, Sumazin P. Chiu HS, et al. Among authors: yang x. Genome Res. 2015 Feb;25(2):257-67. doi: 10.1101/gr.178194.114. Epub 2014 Nov 5. Genome Res. 2015. PMID: 25378249 Free PMC article.

2

An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma.

Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, Rajbhandari P, Bansal M, Guarnieri P, Silva J, Califano A. Sumazin P, et al. Among authors: yang x. Cell. 2011 Oct 14;147(2):370-81. doi: 10.1016/j.cell.2011.09.041. Cell. 2011. PMID: 22000015 Free PMC article.

3

High-throughput validation of ceRNA regulatory networks.

Chiu HS, Martínez MR, Bansal M, Subramanian A, Golub TR, Yang X, Sumazin P, Califano A. Chiu HS, et al. Among authors: yang x. BMC Genomics. 2017 May 30;18(1):418. doi: 10.1186/s12864-017-3790-7. BMC Genomics. 2017. PMID: 28558729 Free PMC article.

4

The number of titrated microRNA species dictates ceRNA regulation.

Chiu HS, Martínez MR, Komissarova EV, Llobet-Navas D, Bansal M, Paull EO, Silva J, Yang X, Sumazin P, Califano A. Chiu HS, et al. Among authors: yang x. Nucleic Acids Res. 2018 May 18;46(9):4354-4369. doi: 10.1093/nar/gky286. Nucleic Acids Res. 2018. PMID: 29684207 Free PMC article.

5

De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data with DeepLinc.

Li R, Yang X. Li R, et al. Among authors: yang x. Genome Biol. 2022 Jun 3;23(1):124. doi: 10.1186/s13059-022-02692-0. Genome Biol. 2022. PMID: 35659722 Free PMC article.

6

Genome-wide assessment of differential translations with ribosome profiling data.

Xiao Z, Zou Q, Liu Y, Yang X. Xiao Z, et al. Among authors: yang x. Nat Commun. 2016 Apr 4;7:11194. doi: 10.1038/ncomms11194. Nat Commun. 2016. PMID: 27041671 Free PMC article.

7

Oncogenic Properties of NEAT1 in Prostate Cancer Cells Depend on the CDC5L-AGRN Transcriptional Regulation Circuit.

Li X, Wang X, Song W, Xu H, Huang R, Wang Y, Zhao W, Xiao Z, Yang X. Li X, et al. Among authors: yang x. Cancer Res. 2018 Aug 1;78(15):4138-4149. doi: 10.1158/0008-5472.CAN-18-0688. Epub 2018 Jun 5. Cancer Res. 2018. PMID: 29871935

8

Function of HNRNPC in breast cancer cells by controlling the dsRNA-induced interferon response.

Wu Y, Zhao W, Liu Y, Tan X, Li X, Zou Q, Xiao Z, Xu H, Wang Y, Yang X. Wu Y, et al. Among authors: yang x. EMBO J. 2018 Dec 3;37(23):e99017. doi: 10.15252/embj.201899017. Epub 2018 Aug 29. EMBO J. 2018. PMID: 30158112 Free PMC article.

9

Survey of the binding preferences of RNA-binding proteins to RNA editing events.

Hu X, Zou Q, Yao L, Yang X. Hu X, et al. Among authors: yang x. Genome Biol. 2022 Aug 4;23(1):169. doi: 10.1186/s13059-022-02741-8. Genome Biol. 2022. PMID: 35927743 Free PMC article.

10

Mettl3-/Mettl14-mediated mRNA N⁶-methyladenosine modulates murine spermatogenesis.

Lin Z, Hsu PJ, Xing X, Fang J, Lu Z, Zou Q, Zhang KJ, Zhang X, Zhou Y, Zhang T, Zhang Y, Song W, Jia G, Yang X, He C, Tong MH. Lin Z, et al. Among authors: yang x. Cell Res. 2017 Oct;27(10):1216-1230. doi: 10.1038/cr.2017.117. Epub 2017 Sep 15. Cell Res. 2017. PMID: 28914256 Free PMC article.

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