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Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.
Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, Yandell M. Law M, et al. Among authors: holt c. Plant Physiol. 2015 Jan;167(1):25-39. doi: 10.1104/pp.114.245027. Epub 2014 Nov 10. Plant Physiol. 2015. PMID: 25384563 Free PMC article.
Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.
Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, Puiu D, Salzberg SL, Dejong PJ, Mockaitis K, Main D, Langley CH, Neale DB. Wegrzyn JL, et al. Among authors: holt c. Genetics. 2014 Mar;196(3):891-909. doi: 10.1534/genetics.113.159996. Genetics. 2014. PMID: 24653211 Free PMC article.
Genome Annotation and Curation Using MAKER and MAKER-P.
Campbell MS, Holt C, Moore B, Yandell M. Campbell MS, et al. Among authors: holt c. Curr Protoc Bioinformatics. 2014 Dec 12;48:4.11.1-4.11.39. doi: 10.1002/0471250953.bi0411s48. Curr Protoc Bioinformatics. 2014. PMID: 25501943 Free PMC article.
The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae.
Neale DB, McGuire PE, Wheeler NC, Stevens KA, Crepeau MW, Cardeno C, Zimin AV, Puiu D, Pertea GM, Sezen UU, Casola C, Koralewski TE, Paul R, Gonzalez-Ibeas D, Zaman S, Cronn R, Yandell M, Holt C, Langley CH, Yorke JA, Salzberg SL, Wegrzyn JL. Neale DB, et al. Among authors: holt c. G3 (Bethesda). 2017 Sep 7;7(9):3157-3167. doi: 10.1534/g3.117.300078. G3 (Bethesda). 2017. PMID: 28751502 Free PMC article.
887 results