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Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.
Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, Yandell M. Law M, et al. Among authors: ware d. Plant Physiol. 2015 Jan;167(1):25-39. doi: 10.1104/pp.114.245027. Epub 2014 Nov 10. Plant Physiol. 2015. PMID: 25384563 Free PMC article.
Gramene, a tool for grass genomics.
Ware DH, Jaiswal P, Ni J, Yap IV, Pan X, Clark KY, Teytelman L, Schmidt SC, Zhao W, Chang K, Cartinhour S, Stein LD, McCouch SR. Ware DH, et al. Plant Physiol. 2002 Dec;130(4):1606-13. doi: 10.1104/pp.015248. Plant Physiol. 2002. PMID: 12481044 Free PMC article. Review.
Comparison of genes among cereals.
Ware D, Stein L. Ware D, et al. Curr Opin Plant Biol. 2003 Apr;6(2):121-7. doi: 10.1016/s1369-5266(03)00012-8. Curr Opin Plant Biol. 2003. PMID: 12667867 Review.
Whole-plant growth stage ontology for angiosperms and its application in plant biology.
Pujar A, Jaiswal P, Kellogg EA, Ilic K, Vincent L, Avraham S, Stevens P, Zapata F, Reiser L, Rhee SY, Sachs MM, Schaeffer M, Stein L, Ware D, McCouch S. Pujar A, et al. Among authors: ware d. Plant Physiol. 2006 Oct;142(2):414-28. doi: 10.1104/pp.106.085720. Epub 2006 Aug 11. Plant Physiol. 2006. PMID: 16905665 Free PMC article.
Evidence-based gene predictions in plant genomes.
Liang C, Mao L, Ware D, Stein L. Liang C, et al. Among authors: ware d. Genome Res. 2009 Oct;19(10):1912-23. doi: 10.1101/gr.088997.108. Epub 2009 Jun 18. Genome Res. 2009. PMID: 19541913 Free PMC article.
Detailed analysis of a contiguous 22-Mb region of the maize genome.
Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, Nagel DH, Collura K, Kudrna D, Currie J, Lin J, Kim H, Angelova A, Scara G, Wissotski M, Golser W, Courtney L, Kruchowski S, Graves TA, Rock SM, Adams S, Fulton LA, Fronick C, Courtney W, Kramer M, Spiegel L, Nascimento L, Kalyanaraman A, Chaparro C, Deragon JM, Miguel PS, Jiang N, Wessler SR, Green PJ, Yu Y, Schwartz DC, Meyers BC, Bennetzen JL, Martienssen RA, McCombie WR, Aluru S, Clifton SW, Schnable PS, Ware D, Wilson RK, Wing RA. Wei F, et al. Among authors: ware d. PLoS Genet. 2009 Nov;5(11):e1000728. doi: 10.1371/journal.pgen.1000728. Epub 2009 Nov 20. PLoS Genet. 2009. PMID: 19936048 Free PMC article.
A genome-wide characterization of microRNA genes in maize.
Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D. Zhang L, et al. Among authors: ware d. PLoS Genet. 2009 Nov;5(11):e1000716. doi: 10.1371/journal.pgen.1000716. Epub 2009 Nov 20. PLoS Genet. 2009. PMID: 19936050 Free PMC article.
347 results