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From FastQ data to high confidence variant calls: the Genome Analysis Toolkit best practices pipeline.
Curr Protoc Bioinformatics. 2013;43(1110):11.10.1-11.10.33. doi: 10.1002/0471250953.bi1110s43.
Curr Protoc Bioinformatics. 2013.
PMID: 25431634
Free PMC article.
Tools and best practices for data processing in allelic expression analysis.
Castel SE, Levy-Moonshine A, Mohammadi P, Banks E, Lappalainen T.
Castel SE, et al. Among authors: levy moonshine a.
Genome Biol. 2015 Sep 17;16(1):195. doi: 10.1186/s13059-015-0762-6.
Genome Biol. 2015.
PMID: 26381377
Free PMC article.
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Comprehensive comparative analysis of 5'-end RNA-sequencing methods.
Adiconis X, Haber AL, Simmons SK, Levy Moonshine A, Ji Z, Busby MA, Shi X, Jacques J, Lancaster MA, Pan JQ, Regev A, Levin JZ.
Adiconis X, et al. Among authors: levy moonshine a.
Nat Methods. 2018 Jul;15(7):505-511. doi: 10.1038/s41592-018-0014-2. Epub 2018 Jun 4.
Nat Methods. 2018.
PMID: 29867192
Free PMC article.
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A multidimensional precision medicine approach identifies an autism subtype characterized by dyslipidemia.
Luo Y, Eran A, Palmer N, Avillach P, Levy-Moonshine A, Szolovits P, Kohane IS.
Luo Y, et al. Among authors: levy moonshine a.
Nat Med. 2020 Sep;26(9):1375-1379. doi: 10.1038/s41591-020-1007-0. Epub 2020 Aug 10.
Nat Med. 2020.
PMID: 32778826
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Thousands of missed genes found in bacterial genomes and their analysis with COMBREX.
Wood DE, Lin H, Levy-Moonshine A, Swaminathan R, Chang YC, Anton BP, Osmani L, Steffen M, Kasif S, Salzberg SL.
Wood DE, et al. Among authors: levy moonshine a.
Biol Direct. 2012 Oct 30;7:37. doi: 10.1186/1745-6150-7-37.
Biol Direct. 2012.
PMID: 23111013
Free PMC article.
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The COMBREX project: design, methodology, and initial results.
Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S.
Anton BP, et al. Among authors: levy moonshine a.
PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27.
PLoS Biol. 2013.
PMID: 24013487
Free PMC article.
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Enhancement of beta-sheet assembly by cooperative hydrogen bonds potential.
Levy-Moonshine A, Amir el-AD, Keasar C.
Levy-Moonshine A, et al.
Bioinformatics. 2009 Oct 15;25(20):2639-45. doi: 10.1093/bioinformatics/btp449. Epub 2009 Jul 23.
Bioinformatics. 2009.
PMID: 19628506
Free PMC article.
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