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Community-driven development for computational biology at Sprints, Hackathons and Codefests.
Möller S, Afgan E, Banck M, Bonnal RJ, Booth T, Chilton J, Cock PJ, Gumbel M, Harris N, Holland R, Kalaš M, Kaján L, Kibukawa E, Powel DR, Prins P, Quinn J, Sallou O, Strozzi F, Seemann T, Sloggett C, Soiland-Reyes S, Spooner W, Steinbiss S, Tille A, Travis AJ, Guimera R, Katayama T, Chapman BA. Möller S, et al. Among authors: afgan e. BMC Bioinformatics. 2014;15 Suppl 14(Suppl 14):S7. doi: 10.1186/1471-2105-15-S14-S7. Epub 2014 Nov 27. BMC Bioinformatics. 2014. PMID: 25472764 Free PMC article.
Galaxy CloudMan: delivering cloud compute clusters.
Afgan E, Baker D, Coraor N, Chapman B, Nekrutenko A, Taylor J. Afgan E, et al. BMC Bioinformatics. 2010 Dec 21;11 Suppl 12(Suppl 12):S4. doi: 10.1186/1471-2105-11-S12-S4. BMC Bioinformatics. 2010. PMID: 21210983 Free PMC article.
BioBlend: automating pipeline analyses within Galaxy and CloudMan.
Sloggett C, Goonasekera N, Afgan E. Sloggett C, et al. Among authors: afgan e. Bioinformatics. 2013 Jul 1;29(13):1685-6. doi: 10.1093/bioinformatics/btt199. Epub 2013 Apr 28. Bioinformatics. 2013. PMID: 23630176 Free PMC article.
GalaxyCloudRunner: enhancing scalable computing for Galaxy.
Goonasekera N, Mahmoud A, Chilton J, Afgan E. Goonasekera N, et al. Among authors: afgan e. Bioinformatics. 2021 Jul 19;37(12):1763-1765. doi: 10.1093/bioinformatics/btaa860. Bioinformatics. 2021. PMID: 33104194 Free PMC article.
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. Afgan E, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W3-W10. doi: 10.1093/nar/gkw343. Epub 2016 May 2. Nucleic Acids Res. 2016. PMID: 27137889 Free PMC article.
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.
Afgan E, Baker D, Batut B, van den Beek M, Bouvier D, Cech M, Chilton J, Clements D, Coraor N, Grüning BA, Guerler A, Hillman-Jackson J, Hiltemann S, Jalili V, Rasche H, Soranzo N, Goecks J, Taylor J, Nekrutenko A, Blankenberg D. Afgan E, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W537-W544. doi: 10.1093/nar/gky379. Nucleic Acids Res. 2018. PMID: 29790989 Free PMC article.
27 results