Kleinjans JC - Search Results

1

diXa: a data infrastructure for chemical safety assessment.

Hendrickx DM, Aerts HJ, Caiment F, Clark D, Ebbels TM, Evelo CT, Gmuender H, Hebels DG, Herwig R, Hescheler J, Jennen DG, Jetten MJ, Kanterakis S, Keun HC, Matser V, Overington JP, Pilicheva E, Sarkans U, Segura-Lepe MP, Sotiriadou I, Wittenberger T, Wittwehr C, Zanzi A, Kleinjans JC. Hendrickx DM, et al. Among authors: kleinjans jc. Bioinformatics. 2015 May 1;31(9):1505-7. doi: 10.1093/bioinformatics/btu827. Epub 2014 Dec 12. Bioinformatics. 2015. PMID: 25505093 Free PMC article.

2

Pattern recognition methods to relate time profiles of gene expression with phenotypic data: a comparative study.

Hendrickx DM, Jennen DG, Briedé JJ, Cavill R, de Kok TM, Kleinjans JC. Hendrickx DM, et al. Among authors: kleinjans jc. Bioinformatics. 2015 Jul 1;31(13):2115-22. doi: 10.1093/bioinformatics/btv108. Epub 2015 Feb 19. Bioinformatics. 2015. PMID: 25701576

3

Assessing compound carcinogenicity in vitro using connectivity mapping.

Caiment F, Tsamou M, Jennen D, Kleinjans J. Caiment F, et al. Carcinogenesis. 2014 Jan;35(1):201-7. doi: 10.1093/carcin/bgt278. Epub 2013 Aug 12. Carcinogenesis. 2014. PMID: 23940306

4

FuSe: a tool to move RNA-Seq analyses from chromosomal/gene loci to functional grouping of mRNA transcripts.

Gupta R, Schrooders Y, Verheijen M, Roth A, Kleinjans J, Caiment F. Gupta R, et al. Bioinformatics. 2021 Apr 20;37(3):375-381. doi: 10.1093/bioinformatics/btaa735. Bioinformatics. 2021. PMID: 32814975 Free PMC article.

5

Evaluation of database-derived pathway development for enabling biomarker discovery for hepatotoxicity.

Hebels DG, Jetten MJ, Aerts HJ, Herwig R, Theunissen DH, Gaj S, van Delft JH, Kleinjans JC. Hebels DG, et al. Among authors: kleinjans jc. Biomark Med. 2014;8(2):185-200. doi: 10.2217/bmm.13.154. Biomark Med. 2014. PMID: 24521014 Review.

6

A Systems Biology Approach for Identifying Hepatotoxicant Groups Based on Similarity in Mechanisms of Action and Chemical Structure.

Hebels DG, Rasche A, Herwig R, van Westen GJ, Jennen DG, Kleinjans JC. Hebels DG, et al. Among authors: kleinjans jc. Methods Mol Biol. 2016;1425:339-59. doi: 10.1007/978-1-4939-3609-0_15. Methods Mol Biol. 2016. PMID: 27311473

7

DTNI: a novel toxicogenomics data analysis tool for identifying the molecular mechanisms underlying the adverse effects of toxic compounds.

Hendrickx DM, Souza T, Jennen DGJ, Kleinjans JCS. Hendrickx DM, et al. Arch Toxicol. 2017 Jun;91(6):2343-2352. doi: 10.1007/s00204-016-1922-5. Epub 2016 Dec 28. Arch Toxicol. 2017. PMID: 28032149 Free PMC article.

8

Workshop report: Identifying opportunities for global integration of toxicogenomics databases, 26-27 June 2013, Research Triangle Park, NC, USA.

Hendrickx DM, Boyles RR, Kleinjans JC, Dearry A. Hendrickx DM, et al. Among authors: kleinjans jc. Arch Toxicol. 2014 Dec;88(12):2323-32. doi: 10.1007/s00204-014-1387-3. Epub 2014 Oct 19. Arch Toxicol. 2014. PMID: 25326818 Free PMC article.

9

DynOVis: a web tool to study dynamic perturbations for capturing dose-over-time effects in biological networks.

Kuijpers TJM, Wolters JEJ, Kleinjans JCS, Jennen DGJ. Kuijpers TJM, et al. BMC Bioinformatics. 2019 Aug 13;20(1):417. doi: 10.1186/s12859-019-2995-y. BMC Bioinformatics. 2019. PMID: 31409281 Free PMC article.

10

Transcriptomic and metabolomic data integration.

Cavill R, Jennen D, Kleinjans J, Briedé JJ. Cavill R, et al. Brief Bioinform. 2016 Sep;17(5):891-901. doi: 10.1093/bib/bbv090. Epub 2015 Oct 14. Brief Bioinform. 2016. PMID: 26467821 Review.

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