Backofen R - Search Results

1

Cell type specific gene expression analysis of prostate needle biopsies resolves tumor tissue heterogeneity.

Krönig M, Walter M, Drendel V, Werner M, Jilg CA, Richter AS, Backofen R, McGarry D, Follo M, Schultze-Seemann W, Schüle R. Krönig M, et al. Among authors: backofen r. Oncotarget. 2015 Jan 20;6(2):1302-14. doi: 10.18632/oncotarget.2744. Oncotarget. 2015. PMID: 25514598 Free PMC article.

2

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions.

Busch A, Richter AS, Backofen R. Busch A, et al. Among authors: backofen r. Bioinformatics. 2008 Dec 15;24(24):2849-56. doi: 10.1093/bioinformatics/btn544. Epub 2008 Oct 21. Bioinformatics. 2008. PMID: 18940824 Free PMC article.

3

Seed-based INTARNA prediction combined with GFP-reporter system identifies mRNA targets of the small RNA Yfr1.

Richter AS, Schleberger C, Backofen R, Steglich C. Richter AS, et al. Among authors: backofen r. Bioinformatics. 2010 Jan 1;26(1):1-5. doi: 10.1093/bioinformatics/btp609. Epub 2009 Oct 22. Bioinformatics. 2010. PMID: 19850757 Free PMC article.

4

Freiburg RNA Tools: a web server integrating INTARNA, EXPARNA and LOCARNA.

Smith C, Heyne S, Richter AS, Will S, Backofen R. Smith C, et al. Among authors: backofen r. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W373-7. doi: 10.1093/nar/gkq316. Epub 2010 May 5. Nucleic Acids Res. 2010. PMID: 20444875 Free PMC article.

5

Hierarchical folding of multiple sequence alignments for the prediction of structures and RNA-RNA interactions.

Seemann SE, Richter AS, Gorodkin J, Backofen R. Seemann SE, et al. Among authors: backofen r. Algorithms Mol Biol. 2010 May 21;5:22. doi: 10.1186/1748-7188-5-22. Algorithms Mol Biol. 2010. PMID: 20492641 Free PMC article.

6

The small RNA PhrS stimulates synthesis of the Pseudomonas aeruginosa quinolone signal.

Sonnleitner E, Gonzalez N, Sorger-Domenigg T, Heeb S, Richter AS, Backofen R, Williams P, Hüttenhofer A, Haas D, Bläsi U. Sonnleitner E, et al. Among authors: backofen r. Mol Microbiol. 2011 May;80(4):868-85. doi: 10.1111/j.1365-2958.2011.07620.x. Epub 2011 Mar 22. Mol Microbiol. 2011. PMID: 21375594 Free article.

7

Accessibility and conservation: general features of bacterial small RNA-mRNA interactions?

Richter AS, Backofen R. Richter AS, et al. Among authors: backofen r. RNA Biol. 2012 Jul;9(7):954-65. doi: 10.4161/rna.20294. Epub 2012 Jul 1. RNA Biol. 2012. PMID: 22767260 Free PMC article.

8

An archaeal sRNA targeting cis- and trans-encoded mRNAs via two distinct domains.

Jäger D, Pernitzsch SR, Richter AS, Backofen R, Sharma CM, Schmitz RA. Jäger D, et al. Among authors: backofen r. Nucleic Acids Res. 2012 Nov;40(21):10964-79. doi: 10.1093/nar/gks847. Epub 2012 Sep 10. Nucleic Acids Res. 2012. PMID: 22965121 Free PMC article.

9

Comparative genomics boosts target prediction for bacterial small RNAs.

Wright PR, Richter AS, Papenfort K, Mann M, Vogel J, Hess WR, Backofen R, Georg J. Wright PR, et al. Among authors: backofen r. Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):E3487-96. doi: 10.1073/pnas.1303248110. Epub 2013 Aug 26. Proc Natl Acad Sci U S A. 2013. PMID: 23980183 Free PMC article.

10

Bioinformatics of prokaryotic RNAs.

Backofen R, Amman F, Costa F, Findeiß S, Richter AS, Stadler PF. Backofen R, et al. RNA Biol. 2014;11(5):470-83. doi: 10.4161/rna.28647. Epub 2014 Apr 2. RNA Biol. 2014. PMID: 24755880 Free PMC article. Review.

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