Jojic N - Search Results

1

RNA splicing. The human splicing code reveals new insights into the genetic determinants of disease.

Xiong HY, Alipanahi B, Lee LJ, Bretschneider H, Merico D, Yuen RK, Hua Y, Gueroussov S, Najafabadi HS, Hughes TR, Morris Q, Barash Y, Krainer AR, Jojic N, Scherer SW, Blencowe BJ, Frey BJ. Xiong HY, et al. Among authors: jojic n. Science. 2015 Jan 9;347(6218):1254806. doi: 10.1126/science.1254806. Epub 2014 Dec 18. Science. 2015. PMID: 25525159 Free PMC article.

2

A comparison of algorithms for inference and learning in probabilistic graphical models.

Frey BJ, Jojic N. Frey BJ, et al. Among authors: jojic n. IEEE Trans Pattern Anal Mach Intell. 2005 Sep;27(9):1392-416. doi: 10.1109/TPAMI.2005.169. IEEE Trans Pattern Anal Mach Intell. 2005. PMID: 16173184 Free article.

3

Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data.

Kakaradov B, Xiong HY, Lee LJ, Jojic N, Frey BJ. Kakaradov B, et al. Among authors: jojic n. BMC Bioinformatics. 2012 Apr 19;13 Suppl 6(Suppl 6):S11. doi: 10.1186/1471-2105-13-S6-S11. BMC Bioinformatics. 2012. PMID: 22537040 Free PMC article.

4

Efficient approximations for learning phylogenetic HMM models from data.

Jojic V, Jojic N, Meek C, Geiger D, Siepel A, Haussler D, Heckerman D. Jojic V, et al. Among authors: jojic n. Bioinformatics. 2004 Aug 4;20 Suppl 1:i161-8. doi: 10.1093/bioinformatics/bth917. Bioinformatics. 2004. PMID: 15262795

5

Population sequencing using short reads: HIV as a case study.

Jojic V, Hertz T, Jojic N. Jojic V, et al. Among authors: jojic n. Pac Symp Biocomput. 2008:114-25. Pac Symp Biocomput. 2008. PMID: 18229680 Free article.

6

Learning MHC I--peptide binding.

Jojic N, Reyes-Gomez M, Heckerman D, Kadie C, Schueler-Furman O. Jojic N, et al. Bioinformatics. 2006 Jul 15;22(14):e227-35. doi: 10.1093/bioinformatics/btl255. Bioinformatics. 2006. PMID: 16873476

7

Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences.

Cuperus JT, Groves B, Kuchina A, Rosenberg AB, Jojic N, Fields S, Seelig G. Cuperus JT, et al. Among authors: jojic n. Genome Res. 2017 Dec;27(12):2015-2024. doi: 10.1101/gr.224964.117. Epub 2017 Nov 2. Genome Res. 2017. PMID: 29097404 Free PMC article.

8

Free Energy Score Spaces: Using Generative Information in Discriminative Classifiers.

Perina A, Cristani M, Castellani U, Murino V, Jojic N. Perina A, et al. Among authors: jojic n. IEEE Trans Pattern Anal Mach Intell. 2012 Jul;34(7):1249-62. doi: 10.1109/TPAMI.2011.241. Epub 2012 Jan 3. IEEE Trans Pattern Anal Mach Intell. 2012. PMID: 22156097

9

Nonparametric combinatorial sequence models.

Wauthier FL, Jordan MI, Jojic N. Wauthier FL, et al. Among authors: jojic n. J Comput Biol. 2011 Nov;18(11):1649-60. doi: 10.1089/cmb.2011.0175. Epub 2011 Nov 2. J Comput Biol. 2011. PMID: 22047543

10

Shift-invariant adaptive double threading: learning MHC II-peptide binding.

Zaitlen N, Reyes-Gomez M, Heckerman D, Jojic N. Zaitlen N, et al. Among authors: jojic n. J Comput Biol. 2008 Sep;15(7):927-42. doi: 10.1089/cmb.2007.0183. J Comput Biol. 2008. PMID: 18771399

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