Greenleaf WJ - Search Results

1

Unraveling the 3D genome: genomics tools for multiscale exploration.

Risca VI, Greenleaf WJ. Risca VI, et al. Among authors: greenleaf wj. Trends Genet. 2015 Jul;31(7):357-72. doi: 10.1016/j.tig.2015.03.010. Epub 2015 Apr 14. Trends Genet. 2015. PMID: 25887733 Free PMC article. Review.

2

A conditional system to specifically link disruption of protein-coding function with reporter expression in mice.

Chiou SH, Kim-Kiselak C, Risca VI, Heimann MK, Chuang CH, Burds AA, Greenleaf WJ, Jacks TE, Feldser DM, Winslow MM. Chiou SH, et al. Among authors: greenleaf wj. Cell Rep. 2014 Jun 26;7(6):2078-86. doi: 10.1016/j.celrep.2014.05.031. Epub 2014 Jun 12. Cell Rep. 2014. PMID: 24931605 Free PMC article.

3

Assaying the epigenome in limited numbers of cells.

Greenleaf WJ. Greenleaf WJ. Methods. 2015 Jan 15;72:51-6. doi: 10.1016/j.ymeth.2014.10.010. Epub 2014 Oct 22. Methods. 2015. PMID: 25461774 Free PMC article. Review.

4

Beyond the Linear Genome: Paired-End Sequencing as a Biophysical Tool.

Risca VI, Greenleaf WJ. Risca VI, et al. Among authors: greenleaf wj. Trends Cell Biol. 2015 Dec;25(12):716-719. doi: 10.1016/j.tcb.2015.08.004. Epub 2015 Oct 1. Trends Cell Biol. 2015. PMID: 26437592 Free PMC article.

5

Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping.

Risca VI, Denny SK, Straight AF, Greenleaf WJ. Risca VI, et al. Among authors: greenleaf wj. Nature. 2017 Jan 12;541(7636):237-241. doi: 10.1038/nature20781. Epub 2016 Dec 26. Nature. 2017. PMID: 28024297 Free PMC article.

6

An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.

Corces MR, Trevino AE, Hamilton EG, Greenside PG, Sinnott-Armstrong NA, Vesuna S, Satpathy AT, Rubin AJ, Montine KS, Wu B, Kathiria A, Cho SW, Mumbach MR, Carter AC, Kasowski M, Orloff LA, Risca VI, Kundaje A, Khavari PA, Montine TJ, Greenleaf WJ, Chang HY. Corces MR, et al. Among authors: greenleaf wj. Nat Methods. 2017 Oct;14(10):959-962. doi: 10.1038/nmeth.4396. Epub 2017 Aug 28. Nat Methods. 2017. PMID: 28846090 Free PMC article.

7

Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts.

Bell JC, Jukam D, Teran NA, Risca VI, Smith OK, Johnson WL, Skotheim JM, Greenleaf WJ, Straight AF. Bell JC, et al. Among authors: greenleaf wj. Elife. 2018 Apr 12;7:e27024. doi: 10.7554/eLife.27024. Elife. 2018. PMID: 29648534 Free PMC article.

8

Chromatin accessibility and the regulatory epigenome.

Klemm SL, Shipony Z, Greenleaf WJ. Klemm SL, et al. Among authors: greenleaf wj. Nat Rev Genet. 2019 Apr;20(4):207-220. doi: 10.1038/s41576-018-0089-8. Nat Rev Genet. 2019. PMID: 30675018 Review.

9

ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis.

Granja JM, Corces MR, Pierce SE, Bagdatli ST, Choudhry H, Chang HY, Greenleaf WJ. Granja JM, et al. Among authors: greenleaf wj. Nat Genet. 2021 Mar;53(3):403-411. doi: 10.1038/s41588-021-00790-6. Epub 2021 Feb 25. Nat Genet. 2021. PMID: 33633365 Free PMC article.

10

Transcription-dependent domain-scale three-dimensional genome organization in the dinoflagellate Breviolum minutum.

Marinov GK, Trevino AE, Xiang T, Kundaje A, Grossman AR, Greenleaf WJ. Marinov GK, et al. Among authors: greenleaf wj. Nat Genet. 2021 May;53(5):613-617. doi: 10.1038/s41588-021-00848-5. Epub 2021 Apr 29. Nat Genet. 2021. PMID: 33927397 Free PMC article.

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