Peng S - Search Results

1

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).

Luo R, Cheung J, Wu E, Wang H, Chan SH, Law WC, He G, Yu C, Liu CM, Zhou D, Li Y, Li R, Wang J, Zhu X, Peng S, Lam TW. Luo R, et al. Among authors: peng s. BMC Bioinformatics. 2015;16 Suppl 7(Suppl 7):S10. doi: 10.1186/1471-2105-16-S7-S10. Epub 2015 Apr 23. BMC Bioinformatics. 2015. PMID: 25952019 Free PMC article.

2

SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner.

Luo R, Wong T, Zhu J, Liu CM, Zhu X, Wu E, Lee LK, Lin H, Zhu W, Cheung DW, Ting HF, Yiu SM, Peng S, Yu C, Li Y, Li R, Lam TW. Luo R, et al. Among authors: peng s. PLoS One. 2013 May 31;8(5):e65632. doi: 10.1371/journal.pone.0065632. Print 2013. PLoS One. 2013. PMID: 23741504 Free PMC article.

3

B-MIC: An Ultrafast Three-Level Parallel Sequence Aligner Using MIC.

Cui Y, Liao X, Zhu X, Wang B, Peng S. Cui Y, et al. Among authors: peng s. Interdiscip Sci. 2016 Mar;8(1):28-34. doi: 10.1007/s12539-015-0278-5. Epub 2015 Sep 10. Interdiscip Sci. 2016. PMID: 26358141

4

A Hybrid Parallel Strategy Based on String Graph Theory to Improve De Novo DNA Assembly on the TianHe-2 Supercomputer.

Zhang F, Liao X, Peng S, Cui Y, Wang B, Zhu X, Liu J. Zhang F, et al. Among authors: peng s. Interdiscip Sci. 2016 Jun;8(2):169-176. doi: 10.1007/s12539-015-0127-6. Epub 2015 Sep 24. Interdiscip Sci. 2016. PMID: 26403255

5

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW, Wang J. Luo R, et al. Among authors: peng s. Gigascience. 2012 Dec 27;1(1):18. doi: 10.1186/2047-217X-1-18. Gigascience. 2012. PMID: 23587118 Free PMC article.

6

Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler.

Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW, Wang J. Luo R, et al. Among authors: peng s. Gigascience. 2015 Jul 8;4:30. doi: 10.1186/s13742-015-0069-2. eCollection 2015. Gigascience. 2015. PMID: 26161257 Free PMC article.

7

A Massively Parallel Computational Method of Reading Index Files for SOAPsnv.

Zhu X, Peng S, Liu S, Cui Y, Gu X, Gao M, Fang L, Fang X. Zhu X, et al. Among authors: peng s. Interdiscip Sci. 2015 Dec;7(4):397-404. doi: 10.1007/s12539-015-0123-x. Epub 2015 Sep 7. Interdiscip Sci. 2015. PMID: 26343781

8

Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture.

Peng S, Cheng M, Huang K, Cui Y, Zhang Z, Guo R, Zhang X, Yang S, Liao X, Lu Y, Zou Q, Shi B. Peng S, et al. BMC Bioinformatics. 2018 Aug 13;19(Suppl 9):282. doi: 10.1186/s12859-018-2276-1. BMC Bioinformatics. 2018. PMID: 30367570 Free PMC article.

9

SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.

Jia W, Qiu K, He M, Song P, Zhou Q, Zhou F, Yu Y, Zhu D, Nickerson ML, Wan S, Liao X, Zhu X, Peng S, Li Y, Wang J, Guo G. Jia W, et al. Among authors: peng s. Genome Biol. 2013 Feb 14;14(2):R12. doi: 10.1186/gb-2013-14-2-r12. Genome Biol. 2013. PMID: 23409703 Free PMC article.

10

Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters.

Lan H, Chan Y, Xu K, Schmidt B, Peng S, Liu W. Lan H, et al. Among authors: peng s. BMC Bioinformatics. 2016 Jul 19;17 Suppl 9(Suppl 9):267. doi: 10.1186/s12859-016-1128-0. BMC Bioinformatics. 2016. PMID: 27455061 Free PMC article.

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