Hackenberg M - Search Results

1

Integrated microRNA, mRNA, and protein expression profiling reveals microRNA regulatory networks in rat kidney treated with a carcinogenic dose of aristolochic acid.

Li Z, Qin T, Wang K, Hackenberg M, Yan J, Gao Y, Yu LR, Shi L, Su Z, Chen T. Li Z, et al. Among authors: hackenberg m. BMC Genomics. 2015 May 8;16(1):365. doi: 10.1186/s12864-015-1516-2. BMC Genomics. 2015. PMID: 25952319 Free PMC article.

2

NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods.

Scheepbouwer C, Hackenberg M, van Eijndhoven MAJ, Gerber A, Pegtel M, Gómez-Martín C. Scheepbouwer C, et al. Among authors: hackenberg m. Nucleic Acids Res. 2023 Jul 5;51(W1):W372-W378. doi: 10.1093/nar/gkad429. Nucleic Acids Res. 2023. PMID: 37216599 Free PMC article.

3

Multiplex Analysis of CircRNAs from Plasma Extracellular Vesicle-Enriched Samples for the Detection of Early-Stage Non-Small Cell Lung Cancer.

Pedraz-Valdunciel C, Giannoukakos S, Giménez-Capitán A, Fortunato D, Filipska M, Bertran-Alamillo J, Bracht JWP, Drozdowskyj A, Valarezo J, Zarovni N, Fernández-Hilario A, Hackenberg M, Aguilar-Hernández A, Molina-Vila MÁ, Rosell R. Pedraz-Valdunciel C, et al. Among authors: hackenberg m. Pharmaceutics. 2022 Sep 24;14(10):2034. doi: 10.3390/pharmaceutics14102034. Pharmaceutics. 2022. PMID: 36297470 Free PMC article.

4

Discovery of novel microRNAs in rat kidney using next generation sequencing and microarray validation.

Meng F, Hackenberg M, Li Z, Yan J, Chen T. Meng F, et al. Among authors: hackenberg m. PLoS One. 2012;7(3):e34394. doi: 10.1371/journal.pone.0034394. Epub 2012 Mar 28. PLoS One. 2012. PMID: 22470567 Free PMC article.

5

Prediction of CpG-island function: CpG clustering vs. sliding-window methods.

Hackenberg M, Barturen G, Carpena P, Luque-Escamilla PL, Previti C, Oliver JL. Hackenberg M, et al. BMC Genomics. 2010 May 26;11:327. doi: 10.1186/1471-2164-11-327. BMC Genomics. 2010. PMID: 20500903 Free PMC article.

6

TargetSpy: a supervised machine learning approach for microRNA target prediction.

Sturm M, Hackenberg M, Langenberger D, Frishman D. Sturm M, et al. Among authors: hackenberg m. BMC Bioinformatics. 2010 May 28;11:292. doi: 10.1186/1471-2105-11-292. BMC Bioinformatics. 2010. PMID: 20509939 Free PMC article.

7

miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments.

Hackenberg M, Rodríguez-Ezpeleta N, Aransay AM. Hackenberg M, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W132-8. doi: 10.1093/nar/gkr247. Epub 2011 Apr 22. Nucleic Acids Res. 2011. PMID: 21515631 Free PMC article.

8

A transgenic transcription factor (TaDREB3) in barley affects the expression of microRNAs and other small non-coding RNAs.

Hackenberg M, Shi BJ, Gustafson P, Langridge P. Hackenberg M, et al. PLoS One. 2012;7(8):e42030. doi: 10.1371/journal.pone.0042030. Epub 2012 Aug 1. PLoS One. 2012. PMID: 22870277 Free PMC article.

9

Whole transcriptome analysis of a reversible neurodegenerative process in Drosophila reveals potential neuroprotective genes.

Ferreiro MJ, Rodríguez-Ezpeleta N, Pérez C, Hackenberg M, Aransay AM, Barrio R, Cantera R. Ferreiro MJ, et al. Among authors: hackenberg m. BMC Genomics. 2012 Sep 15;13:483. doi: 10.1186/1471-2164-13-483. BMC Genomics. 2012. PMID: 22978642 Free PMC article.

10

Characterization of phosphorus-regulated miR399 and miR827 and their isomirs in barley under phosphorus-sufficient and phosphorus-deficient conditions.

Hackenberg M, Shi BJ, Gustafson P, Langridge P. Hackenberg M, et al. BMC Plant Biol. 2013 Dec 13;13:214. doi: 10.1186/1471-2229-13-214. BMC Plant Biol. 2013. PMID: 24330740 Free PMC article.

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