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Bioconductor: open software development for computational biology and bioinformatics.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. Gentleman RC, et al. Genome Biol. 2004;5(10):R80. doi: 10.1186/gb-2004-5-10-r80. Epub 2004 Sep 15. Genome Biol. 2004. PMID: 15461798 Free PMC article.
A benchmark for RNA-seq quantification pipelines.
Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. Teng M, et al. Among authors: irizarry ra. Genome Biol. 2016 Apr 23;17:74. doi: 10.1186/s13059-016-0940-1. Genome Biol. 2016. PMID: 27107712 Free PMC article.
Erratum to: A benchmark for RNA-seq quantification pipelines.
Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. Teng M, et al. Among authors: irizarry ra. Genome Biol. 2016 May 23;17(1):107. doi: 10.1186/s13059-016-0986-0. Genome Biol. 2016. PMID: 27215799 Free PMC article. No abstract available.
Flexible expressed region analysis for RNA-seq with derfinder.
Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B, Irizarry RA, Leek JT, Jaffe AE. Collado-Torres L, et al. Among authors: irizarry ra. Nucleic Acids Res. 2017 Jan 25;45(2):e9. doi: 10.1093/nar/gkw852. Epub 2016 Sep 29. Nucleic Acids Res. 2017. PMID: 27694310 Free PMC article.
Erratum to: A benchmark for RNA-seq quantification pipelines.
Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. Teng M, et al. Among authors: irizarry ra. Genome Biol. 2016 Sep 30;17(1):203. doi: 10.1186/s13059-016-1060-7. Genome Biol. 2016. PMID: 27716375 Free PMC article. No abstract available.
Challenges and emerging directions in single-cell analysis.
Yuan GC, Cai L, Elowitz M, Enver T, Fan G, Guo G, Irizarry R, Kharchenko P, Kim J, Orkin S, Quackenbush J, Saadatpour A, Schroeder T, Shivdasani R, Tirosh I. Yuan GC, et al. Genome Biol. 2017 May 8;18(1):84. doi: 10.1186/s13059-017-1218-y. Genome Biol. 2017. PMID: 28482897 Free PMC article. Review.
180 results