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Measuring Asymmetry in Time-Stamped Phylogenies.
Dearlove BL, Frost SD. Dearlove BL, et al. Among authors: frost sd. PLoS Comput Biol. 2015 Jul 6;11(7):e1004312. doi: 10.1371/journal.pcbi.1004312. eCollection 2015 Jul. PLoS Comput Biol. 2015. PMID: 26147205 Free PMC article.
Modelling tree shape and structure in viral phylodynamics.
Frost SD, Volz EM. Frost SD, et al. Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120208. doi: 10.1098/rstb.2012.0208. Print 2013 Mar 19. Philos Trans R Soc Lond B Biol Sci. 2013. PMID: 23382430 Free PMC article.
Inferring the source of transmission with phylogenetic data.
Volz EM, Frost SD. Volz EM, et al. Among authors: frost sd. PLoS Comput Biol. 2013;9(12):e1003397. doi: 10.1371/journal.pcbi.1003397. Epub 2013 Dec 19. PLoS Comput Biol. 2013. PMID: 24367249 Free PMC article.
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium. Ratmann O, et al. Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7. Mol Biol Evol. 2017. PMID: 28053012 Free PMC article.
Genotype-Specific Evolution of Hepatitis E Virus.
Brayne AB, Dearlove BL, Lester JS, Kosakovsky Pond SL, Frost SDW. Brayne AB, et al. J Virol. 2017 Apr 13;91(9):e02241-16. doi: 10.1128/JVI.02241-16. Print 2017 May 1. J Virol. 2017. PMID: 28202767 Free PMC article.
HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.
Kosakovsky Pond SL, Poon AFY, Velazquez R, Weaver S, Hepler NL, Murrell B, Shank SD, Magalis BR, Bouvier D, Nekrutenko A, Wisotsky S, Spielman SJ, Frost SDW, Muse SV. Kosakovsky Pond SL, et al. Among authors: frost sdw. Mol Biol Evol. 2020 Jan 1;37(1):295-299. doi: 10.1093/molbev/msz197. Mol Biol Evol. 2020. PMID: 31504749 Free PMC article.
157 results