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Anatomy of BioJS, an open source community for the life sciences.
Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Yachdav G, et al. Among authors: schneider mv. Elife. 2015 Jul 8;4:e07009. doi: 10.7554/eLife.07009. Elife. 2015. PMID: 26153621 Free PMC article.
iAnn: an event sharing platform for the life sciences.
Jimenez RC, Albar JP, Bhak J, Blatter MC, Blicher T, Brazas MD, Brooksbank C, Budd A, De Las Rivas J, Dreyer J, van Driel MA, Dunn MJ, Fernandes PL, van Gelder CW, Hermjakob H, Ioannidis V, Judge DP, Kahlem P, Korpelainen E, Kraus HJ, Loveland J, Mayer C, McDowall J, Moran F, Mulder N, Nyronen T, Rother K, Salazar GA, Schneider R, Via A, Villaveces JM, Yu P, Schneider MV, Attwood TK, Corpas M. Jimenez RC, et al. Among authors: schneider mv, schneider r. Bioinformatics. 2013 Aug 1;29(15):1919-21. doi: 10.1093/bioinformatics/btt306. Epub 2013 Jun 5. Bioinformatics. 2013. PMID: 23742982 Free PMC article.
Four simple recommendations to encourage best practices in research software.
Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S. Jiménez RC, et al. Among authors: schneider mv. F1000Res. 2017 Jun 13;6:ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017. F1000Res. 2017. PMID: 28751965 Free PMC article.
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.
Corpas M, Jimenez RC, Bongcam-Rudloff E, Budd A, Brazas MD, Fernandes PL, Gaeta B, van Gelder C, Korpelainen E, Lewitter F, McGrath A, MacLean D, Palagi PM, Rother K, Taylor J, Via A, Watson M, Schneider MV, Attwood TK. Corpas M, et al. Among authors: schneider mv. Bioinformatics. 2015 Jan 1;31(1):140-2. doi: 10.1093/bioinformatics/btu601. Epub 2014 Sep 4. Bioinformatics. 2015. PMID: 25189782 Free PMC article.
GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training.
Attwood TK, Bongcam-Rudloff E, Brazas ME, Corpas M, Gaudet P, Lewitter F, Mulder N, Palagi PM, Schneider MV, van Gelder CW; GOBLET Consortium. Attwood TK, et al. Among authors: schneider mv. PLoS Comput Biol. 2015 Apr 9;11(4):e1004143. doi: 10.1371/journal.pcbi.1004143. eCollection 2015 Apr. PLoS Comput Biol. 2015. PMID: 25856076 Free PMC article.
An open science peer review oath.
Aleksic J, Alexa A, Attwood TK, Chue Hong N, Dahlö M, Davey R, Dinkel H, Förstner KU, Grigorov I, Hériché JK, Lahti L, MacLean D, Markie ML, Molloy J, Schneider MV, Scott C, Smith-Unna R, Vieira BM; as part of the AllBio: Open Science & Reproducibility Best Practice Workshop. Aleksic J, et al. Among authors: schneider mv. F1000Res. 2014 Nov 12;3:271. doi: 10.12688/f1000research.5686.2. eCollection 2014. F1000Res. 2014. PMID: 25653839 Free PMC article.
Best practice data life cycle approaches for the life sciences.
Griffin PC, Khadake J, LeMay KS, Lewis SE, Orchard S, Pask A, Pope B, Roessner U, Russell K, Seemann T, Treloar A, Tyagi S, Christiansen JH, Dayalan S, Gladman S, Hangartner SB, Hayden HL, Ho WWH, Keeble-Gagnère G, Korhonen PK, Neish P, Prestes PR, Richardson MF, Watson-Haigh NS, Wyres KL, Young ND, Schneider MV. Griffin PC, et al. Among authors: schneider mv. F1000Res. 2017 Aug 31;6:1618. doi: 10.12688/f1000research.12344.2. eCollection 2017. F1000Res. 2017. PMID: 30109017 Free PMC article.
Bioinformatics curriculum guidelines: toward a definition of core competencies.
Welch L, Lewitter F, Schwartz R, Brooksbank C, Radivojac P, Gaeta B, Schneider MV. Welch L, et al. Among authors: schneider mv. PLoS Comput Biol. 2014 Mar 6;10(3):e1003496. doi: 10.1371/journal.pcbi.1003496. eCollection 2014 Mar. PLoS Comput Biol. 2014. PMID: 24603430 Free PMC article. No abstract available.
44 results