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Anatomy of BioJS, an open source community for the life sciences.
Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Yachdav G, et al. Elife. 2015 Jul 8;4:e07009. doi: 10.7554/eLife.07009. Elife. 2015. PMID: 26153621 Free PMC article.
BioJS: an open source standard for biological visualisation - its status in 2014.
Corpas M, Jimenez R, Carbon SJ, García A, Garcia L, Goldberg T, Gomez J, Kalderimis A, Lewis SE, Mulvany I, Pawlik A, Rowland F, Salazar G, Schreiber F, Sillitoe I, Spooner WH, Thanki AS, Villaveces JM, Yachdav G, Hermjakob H. Corpas M, et al. Among authors: yachdav g. F1000Res. 2014 Feb 13;3:55. doi: 10.12688/f1000research.3-55.v1. eCollection 2014. F1000Res. 2014. PMID: 25075290 Free PMC article.
SNAP predicts effect of mutations on protein function.
Bromberg Y, Yachdav G, Rost B. Bromberg Y, et al. Among authors: yachdav g. Bioinformatics. 2008 Oct 15;24(20):2397-8. doi: 10.1093/bioinformatics/btn435. Epub 2008 Aug 30. Bioinformatics. 2008. PMID: 18757876 Free PMC article.
HeatMapViewer: interactive display of 2D data in biology.
Yachdav G, Hecht M, Pasmanik-Chor M, Yeheskel A, Rost B. Yachdav G, et al. F1000Res. 2014 Feb 13;3:48. doi: 10.12688/f1000research.3-48.v1. eCollection 2014. F1000Res. 2014. PMID: 24860644 Free PMC article.
Tools and data services registry: a community effort to document bioinformatics resources.
Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. Ison J, et al. Among authors: yachdav g. Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26538599 Free PMC article.
PROFbval: predict flexible and rigid residues in proteins.
Schlessinger A, Yachdav G, Rost B. Schlessinger A, et al. Among authors: yachdav g. Bioinformatics. 2006 Apr 1;22(7):891-3. doi: 10.1093/bioinformatics/btl032. Epub 2006 Feb 2. Bioinformatics. 2006. PMID: 16455751
The PredictProtein server.
Rost B, Yachdav G, Liu J. Rost B, et al. Among authors: yachdav g. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W321-6. doi: 10.1093/nar/gkh377. Nucleic Acids Res. 2004. PMID: 15215403 Free PMC article.
18 results