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Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.
Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS. Driebe EM, et al. Among authors: brzoska pm. PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015. PLoS One. 2015. PMID: 26161978 Free PMC article.
Tumor transcriptome sequencing reveals allelic expression imbalances associated with copy number alterations.
Tuch BB, Laborde RR, Xu X, Gu J, Chung CB, Monighetti CK, Stanley SJ, Olsen KD, Kasperbauer JL, Moore EJ, Broomer AJ, Tan R, Brzoska PM, Muller MW, Siddiqui AS, Asmann YW, Sun Y, Kuersten S, Barker MA, De La Vega FM, Smith DI. Tuch BB, et al. Among authors: brzoska pm. PLoS One. 2010 Feb 19;5(2):e9317. doi: 10.1371/journal.pone.0009317. PLoS One. 2010. PMID: 20174472 Free PMC article.
Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing.
Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, Beaudry J, Matthews M, Schupp J, Wagner DM, Birdsell D, Vogler AJ, Furtado MR, Keim P, Budowle B. Cummings CA, et al. Investig Genet. 2010 Sep 1;1(1):5. doi: 10.1186/2041-2223-1-5. Investig Genet. 2010. PMID: 21092340 Free PMC article.
Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology.
Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, Prior K, Szczepanowski R, Ji Y, Zhang W, McLaughlin SF, Henkhaus JK, Leopold B, Bielaszewska M, Prager R, Brzoska PM, Moore RL, Guenther S, Rothberg JM, Karch H. Mellmann A, et al. Among authors: brzoska pm. PLoS One. 2011;6(7):e22751. doi: 10.1371/journal.pone.0022751. Epub 2011 Jul 20. PLoS One. 2011. PMID: 21799941 Free PMC article.
Comparative analysis of genome sequences covering the seven cronobacter species.
Joseph S, Desai P, Ji Y, Cummings CA, Shih R, Degoricija L, Rico A, Brzoska P, Hamby SE, Masood N, Hariri S, Sonbol H, Chuzhanova N, McClelland M, Furtado MR, Forsythe SJ. Joseph S, et al. PLoS One. 2012;7(11):e49455. doi: 10.1371/journal.pone.0049455. Epub 2012 Nov 16. PLoS One. 2012. PMID: 23166675 Free PMC article.
SARS-CoV-2 variants of concern surveillance including Omicron using RT-PCR-based genotyping offers comparable performance to whole genome sequencing.
Vanoni S, Matulevicius A, Avdiu B, Scantamburlo G, Ulekleiv C, Brzoska PM, Furtado MR, Feenstra JDM, Rico A, Gandhi M, Giacobazzi E, Masi E, Paulmichl M, Nofziger C. Vanoni S, et al. Among authors: brzoska pm. Front Cell Infect Microbiol. 2022 Nov 3;12:960065. doi: 10.3389/fcimb.2022.960065. eCollection 2022. Front Cell Infect Microbiol. 2022. PMID: 36405967 Free PMC article.
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