Wang Z - Search Results

1

Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.

Gordon SP, Tseng E, Salamov A, Zhang J, Meng X, Zhao Z, Kang D, Underwood J, Grigoriev IV, Figueroa M, Schilling JS, Chen F, Wang Z. Gordon SP, et al. Among authors: wang z. PLoS One. 2015 Jul 15;10(7):e0132628. doi: 10.1371/journal.pone.0132628. eCollection 2015. PLoS One. 2015. PMID: 26177194 Free PMC article.

2

Validation of two ribosomal RNA removal methods for microbial metatranscriptomics.

He S, Wurtzel O, Singh K, Froula JL, Yilmaz S, Tringe SG, Wang Z, Chen F, Lindquist EA, Sorek R, Hugenholtz P. He S, et al. Among authors: wang z. Nat Methods. 2010 Oct;7(10):807-12. doi: 10.1038/nmeth.1507. Epub 2010 Sep 19. Nat Methods. 2010. PMID: 20852648 Free article.

3

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads.

Martin J, Bruno VM, Fang Z, Meng X, Blow M, Zhang T, Sherlock G, Snyder M, Wang Z. Martin J, et al. Among authors: wang z. BMC Genomics. 2010 Nov 24;11:663. doi: 10.1186/1471-2164-11-663. BMC Genomics. 2010. PMID: 21106091 Free PMC article.

4

The prevalence and regulation of antisense transcripts in Schizosaccharomyces pombe.

Ni T, Tu K, Wang Z, Song S, Wu H, Xie B, Scott KC, Grewal SI, Gao Y, Zhu J. Ni T, et al. Among authors: wang z. PLoS One. 2010 Dec 20;5(12):e15271. doi: 10.1371/journal.pone.0015271. PLoS One. 2010. PMID: 21187966 Free PMC article.

5

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen.

Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, Wang Z, Rubin EM. Hess M, et al. Among authors: wang z. Science. 2011 Jan 28;331(6016):463-7. doi: 10.1126/science.1200387. Science. 2011. PMID: 21273488

6

A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing.

Martin JA, Johnson NV, Gross SM, Schnable J, Meng X, Wang M, Coleman-Derr D, Lindquist E, Wei CL, Kaeppler S, Chen F, Wang Z. Martin JA, et al. Among authors: wang z, wang m. Sci Rep. 2014 Mar 31;4:4519. doi: 10.1038/srep04519. Sci Rep. 2014. PMID: 24682209 Free PMC article.

7

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.

Shi W, Moon CD, Leahy SC, Kang D, Froula J, Kittelmann S, Fan C, Deutsch S, Gagic D, Seedorf H, Kelly WJ, Atua R, Sang C, Soni P, Li D, Pinares-Patiño CS, McEwan JC, Janssen PH, Chen F, Visel A, Wang Z, Attwood GT, Rubin EM. Shi W, et al. Among authors: wang z. Genome Res. 2014 Sep;24(9):1517-25. doi: 10.1101/gr.168245.113. Epub 2014 Jun 6. Genome Res. 2014. PMID: 24907284 Free PMC article.

8

PIWI proteins are dispensable for mouse somatic development and reprogramming of fibroblasts into pluripotent stem cells.

Cheng EC, Kang D, Wang Z, Lin H. Cheng EC, et al. Among authors: wang z. PLoS One. 2014 Sep 19;9(9):e97821. doi: 10.1371/journal.pone.0097821. eCollection 2014. PLoS One. 2014. PMID: 25238487 Free PMC article.

9

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities.

Kang DD, Froula J, Egan R, Wang Z. Kang DD, et al. Among authors: wang z. PeerJ. 2015 Aug 27;3:e1165. doi: 10.7717/peerj.1165. eCollection 2015. PeerJ. 2015. PMID: 26336640 Free PMC article.

10

SpaRC: scalable sequence clustering using Apache Spark.

Shi L, Meng X, Tseng E, Mascagni M, Wang Z. Shi L, et al. Among authors: wang z. Bioinformatics. 2019 Mar 1;35(5):760-768. doi: 10.1093/bioinformatics/bty733. Bioinformatics. 2019. PMID: 30816928

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