Schwartz K - Search Results

1

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions.

Schep AN, Buenrostro JD, Denny SK, Schwartz K, Sherlock G, Greenleaf WJ. Schep AN, et al. Among authors: schwartz k. Genome Res. 2015 Nov;25(11):1757-70. doi: 10.1101/gr.192294.115. Epub 2015 Aug 27. Genome Res. 2015. PMID: 26314830 Free PMC article.

2

Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae.

Wenger JW, Schwartz K, Sherlock G. Wenger JW, et al. Among authors: schwartz k. PLoS Genet. 2010 May 13;6(5):e1000942. doi: 10.1371/journal.pgen.1000942. PLoS Genet. 2010. PMID: 20485559 Free PMC article.

3

A genome-wide analysis reveals no nuclear dobzhansky-muller pairs of determinants of speciation between S. cerevisiae and S. paradoxus, but suggests more complex incompatibilities.

Kao KC, Schwartz K, Sherlock G. Kao KC, et al. Among authors: schwartz k. PLoS Genet. 2010 Jul 29;6(7):e1001038. doi: 10.1371/journal.pgen.1001038. PLoS Genet. 2010. PMID: 20686707 Free PMC article.

4

GC-content normalization for RNA-Seq data.

Risso D, Schwartz K, Sherlock G, Dudoit S. Risso D, et al. Among authors: schwartz k. BMC Bioinformatics. 2011 Dec 17;12:480. doi: 10.1186/1471-2105-12-480. BMC Bioinformatics. 2011. PMID: 22177264 Free PMC article.

5

APJ1 and GRE3 homologs work in concert to allow growth in xylose in a natural Saccharomyces sensu stricto hybrid yeast.

Schwartz K, Wenger JW, Dunn B, Sherlock G. Schwartz K, et al. Genetics. 2012 Jun;191(2):621-32. doi: 10.1534/genetics.112.140053. Epub 2012 Mar 16. Genetics. 2012. PMID: 22426884 Free PMC article.

6

Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure.

Muzzey D, Schwartz K, Weissman JS, Sherlock G. Muzzey D, et al. Among authors: schwartz k. Genome Biol. 2013;14(9):R97. doi: 10.1186/gb-2013-14-9-r97. Genome Biol. 2013. PMID: 24025428 Free PMC article.

7

The Valley-of-Death: reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment.

Chiotti KE, Kvitek DJ, Schmidt KH, Koniges G, Schwartz K, Donckels EA, Rosenzweig F, Sherlock G. Chiotti KE, et al. Among authors: schwartz k. Genomics. 2014 Dec;104(6 Pt A):431-7. doi: 10.1016/j.ygeno.2014.10.011. Epub 2014 Nov 1. Genomics. 2014. PMID: 25449178 Free PMC article.

8

Preparation of Yeast DNA Sequencing Libraries.

Schwartz K, Sherlock G. Schwartz K, et al. Cold Spring Harb Protoc. 2016 Oct 3;2016(10). doi: 10.1101/pdb.prot088930. Cold Spring Harb Protoc. 2016. PMID: 27698239

9

High-Throughput Yeast Strain Sequencing.

Schwartz K, Sherlock G. Schwartz K, et al. Cold Spring Harb Protoc. 2016 Oct 3;2016(10). doi: 10.1101/pdb.top077651. Cold Spring Harb Protoc. 2016. PMID: 27698244 Review.

10

Analysis of Repair Mechanisms following an Induced Double-Strand Break Uncovers Recessive Deleterious Alleles in the Candida albicans Diploid Genome.

Feri A, Loll-Krippleber R, Commere PH, Maufrais C, Sertour N, Schwartz K, Sherlock G, Bougnoux ME, d'Enfert C, Legrand M. Feri A, et al. Among authors: schwartz k. mBio. 2016 Oct 11;7(5):e01109-16. doi: 10.1128/mBio.01109-16. mBio. 2016. PMID: 27729506 Free PMC article.

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