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Do genome-scale models need exact solvers or clearer standards?
Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I. Ebrahim A, et al. Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. Mol Syst Biol. 2015. PMID: 26467284 Free PMC article. No abstract available.
Sulfide-driven microbial electrosynthesis.
Gong Y, Ebrahim A, Feist AM, Embree M, Zhang T, Lovley D, Zengler K. Gong Y, et al. Among authors: ebrahim a. Environ Sci Technol. 2013 Jan 2;47(1):568-73. doi: 10.1021/es303837j. Epub 2012 Dec 19. Environ Sci Technol. 2013. PMID: 23252645
Determining the control circuitry of redox metabolism at the genome-scale.
Federowicz S, Kim D, Ebrahim A, Lerman J, Nagarajan H, Cho BK, Zengler K, Palsson B. Federowicz S, et al. Among authors: ebrahim a. PLoS Genet. 2014 Apr 3;10(4):e1004264. doi: 10.1371/journal.pgen.1004264. eCollection 2014 Apr. PLoS Genet. 2014. PMID: 24699140 Free PMC article.
Model-driven discovery of underground metabolic functions in Escherichia coli.
Guzmán GI, Utrilla J, Nurk S, Brunk E, Monk JM, Ebrahim A, Palsson BO, Feist AM. Guzmán GI, et al. Among authors: ebrahim a. Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):929-34. doi: 10.1073/pnas.1414218112. Epub 2015 Jan 6. Proc Natl Acad Sci U S A. 2015. PMID: 25564669 Free PMC article.
230 results