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Do genome-scale models need exact solvers or clearer standards?
Ebrahim A, Almaas E, Bauer E, Bordbar A, Burgard AP, Chang RL, Dräger A, Famili I, Feist AM, Fleming RM, Fong SS, Hatzimanikatis V, Herrgård MJ, Holder A, Hucka M, Hyduke D, Jamshidi N, Lee SY, Le Novère N, Lerman JA, Lewis NE, Ma D, Mahadevan R, Maranas C, Nagarajan H, Navid A, Nielsen J, Nielsen LK, Nogales J, Noronha A, Pal C, Palsson BO, Papin JA, Patil KR, Price ND, Reed JL, Saunders M, Senger RS, Sonnenschein N, Sun Y, Thiele I. Ebrahim A, et al. Among authors: nielsen j, nielsen lk. Mol Syst Biol. 2015 Oct 14;11(10):831. doi: 10.15252/msb.20156157. Mol Syst Biol. 2015. PMID: 26467284 Free PMC article. No abstract available.
Fermentative butanol production by Clostridia.
Lee SY, Park JH, Jang SH, Nielsen LK, Kim J, Jung KS. Lee SY, et al. Among authors: nielsen lk. Biotechnol Bioeng. 2008 Oct 1;101(2):209-28. doi: 10.1002/bit.22003. Biotechnol Bioeng. 2008. PMID: 18727018 Review.
C4GEM, a genome-scale metabolic model to study C4 plant metabolism.
Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK. Dal'Molin CG, et al. Among authors: nielsen lk. Plant Physiol. 2010 Dec;154(4):1871-85. doi: 10.1104/pp.110.166488. Epub 2010 Oct 25. Plant Physiol. 2010. PMID: 20974891 Free PMC article.
Plant genome-scale metabolic reconstruction and modelling.
de Oliveira Dal'Molin CG, Nielsen LK. de Oliveira Dal'Molin CG, et al. Among authors: nielsen lk. Curr Opin Biotechnol. 2013 Apr;24(2):271-7. doi: 10.1016/j.copbio.2012.08.007. Epub 2012 Sep 1. Curr Opin Biotechnol. 2013. PMID: 22947602 Review.
Plant genome-scale modeling and implementation.
Dal'molin CG, Quek LE, Palfreyman RW, Nielsen LK. Dal'molin CG, et al. Among authors: nielsen lk. Methods Mol Biol. 2014;1090:317-32. doi: 10.1007/978-1-62703-688-7_19. Methods Mol Biol. 2014. PMID: 24222424
A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism.
Hefzi H, Ang KS, Hanscho M, Bordbar A, Ruckerbauer D, Lakshmanan M, Orellana CA, Baycin-Hizal D, Huang Y, Ley D, Martinez VS, Kyriakopoulos S, Jiménez NE, Zielinski DC, Quek LE, Wulff T, Arnsdorf J, Li S, Lee JS, Paglia G, Loira N, Spahn PN, Pedersen LE, Gutierrez JM, King ZA, Lund AM, Nagarajan H, Thomas A, Abdel-Haleem AM, Zanghellini J, Kildegaard HF, Voldborg BG, Gerdtzen ZP, Betenbaugh MJ, Palsson BO, Andersen MR, Nielsen LK, Borth N, Lee DY, Lewis NE. Hefzi H, et al. Among authors: nielsen lk. Cell Syst. 2016 Nov 23;3(5):434-443.e8. doi: 10.1016/j.cels.2016.10.020. Cell Syst. 2016. PMID: 27883890 Free PMC article.
332 results