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Tools and data services registry: a community effort to document bioinformatics resources.
Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. Ison J, et al. Among authors: cesareni g. Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26538599 Free PMC article.
MINT: a Molecular INTeraction database.
Zanzoni A, Montecchi-Palazzi L, Quondam M, Ausiello G, Helmer-Citterich M, Cesareni G. Zanzoni A, et al. Among authors: cesareni g. FEBS Lett. 2002 Feb 20;513(1):135-40. doi: 10.1016/s0014-5793(01)03293-8. FEBS Lett. 2002. PMID: 11911893 Free article. Review.
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Küster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ. Puntervoll P, et al. Among authors: cesareni g. Nucleic Acids Res. 2003 Jul 1;31(13):3625-30. doi: 10.1093/nar/gkg545. Nucleic Acids Res. 2003. PMID: 12824381 Free PMC article.
Searching the MINT database for protein interaction information.
Cesareni G, Chatr-Aryamontri A, Licata L, Ceol A. Cesareni G, et al. Curr Protoc Bioinformatics. 2008 Jun;Chapter 8:8.5.1-8.5.13. doi: 10.1002/0471250953.bi0805s22. Curr Protoc Bioinformatics. 2008. PMID: 18551417 Review.
MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.
Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H. Chatr-aryamontri A, et al. Among authors: cesareni g. Genome Biol. 2008;9 Suppl 2(Suppl 2):S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834496 Free PMC article.
MINT, the molecular interaction database: 2009 update.
Ceol A, Chatr Aryamontri A, Licata L, Peluso D, Briganti L, Perfetto L, Castagnoli L, Cesareni G. Ceol A, et al. Among authors: cesareni g. Nucleic Acids Res. 2010 Jan;38(Database issue):D532-9. doi: 10.1093/nar/gkp983. Epub 2009 Nov 6. Nucleic Acids Res. 2010. PMID: 19897547 Free PMC article.
246 results