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Tools and data services registry: a community effort to document bioinformatics resources.
Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3.
Nucleic Acids Res. 2016.
PMID: 26538599
Free PMC article.
C.U.R.R.F. (Codon Usage regarding Restriction Finder): a free Java(®)-based tool to detect potential restriction sites in both coding and non-coding DNA sequences.
Gatter M, Gatter T, Matthäus F.
Gatter M, et al. Among authors: gatter t.
Mol Biotechnol. 2012 Oct;52(2):123-8. doi: 10.1007/s12033-011-9479-2.
Mol Biotechnol. 2012.
PMID: 22161280
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Ryūtō: network-flow based transcriptome reconstruction.
Gatter T, Stadler PF.
Gatter T, et al.
BMC Bioinformatics. 2019 Apr 16;20(1):190. doi: 10.1186/s12859-019-2786-5.
BMC Bioinformatics. 2019.
PMID: 30991937
Free PMC article.
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Ryūtō: improved multi-sample transcript assembly for differential transcript expression analysis and more.
Gatter T, Stadler PF.
Gatter T, et al.
Bioinformatics. 2021 Dec 7;37(23):4307-4313. doi: 10.1093/bioinformatics/btab494.
Bioinformatics. 2021.
PMID: 34255826
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Expansion of gene clusters, circular orders, and the shortest Hamiltonian path problem.
Prohaska SJ, Berkemer SJ, Gärtner F, Gatter T, Retzlaff N; Students of the Graphs and Biological Networks Lab 2017; Höner Zu Siederdissen C, Stadler PF.
Prohaska SJ, et al. Among authors: gatter t.
J Math Biol. 2018 Aug;77(2):313-341. doi: 10.1007/s00285-017-1197-3. Epub 2017 Dec 19.
J Math Biol. 2018.
PMID: 29260295
Free PMC article.
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LazyB: fast and cheap genome assembly.
Gatter T, von Löhneysen S, Fallmann J, Drozdova P, Hartmann T, Stadler PF.
Gatter T, et al.
Algorithms Mol Biol. 2021 Jun 1;16(1):8. doi: 10.1186/s13015-021-00186-5.
Algorithms Mol Biol. 2021.
PMID: 34074310
Free PMC article.
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The Genome of the "Sea Vomit" Didemnum vexillum.
Parra-Rincón E, Velandia-Huerto CA, Gittenberger A, Fallmann J, Gatter T, Brown FD, Stadler PF, Bermúdez-Santana CI.
Parra-Rincón E, et al. Among authors: gatter t.
Life (Basel). 2021 Dec 10;11(12):1377. doi: 10.3390/life11121377.
Life (Basel). 2021.
PMID: 34947908
Free PMC article.
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