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Tools and data services registry: a community effort to document bioinformatics resources.
Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. Ison J, et al. Among authors: via a. Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26538599 Free PMC article.
SH3-Hunter: discovery of SH3 domain interaction sites in proteins.
Ferraro E, Peluso D, Via A, Ausiello G, Helmer-Citterich M. Ferraro E, et al. Among authors: via a. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W451-4. doi: 10.1093/nar/gkm296. Epub 2007 May 7. Nucleic Acids Res. 2007. PMID: 17485474 Free PMC article.
A structure filter for the Eukaryotic Linear Motif Resource.
Via A, Gould CM, Gemünd C, Gibson TJ, Helmer-Citterich M. Via A, et al. BMC Bioinformatics. 2009 Oct 24;10:351. doi: 10.1186/1471-2105-10-351. BMC Bioinformatics. 2009. PMID: 19852836 Free PMC article.
Putatively functional motif occurrences are mapped onto a representative domain, given that a high quality reference SCOP domain structure is available for the protein itself or a close relative. ...The structure filter is implemented as a pipeline wit …
Putatively functional motif occurrences are mapped onto a representative domain, given that a high quality reference SCOP doma …
ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.
Puntervoll P, Linding R, Gemünd C, Chabanis-Davidson S, Mattingsdal M, Cameron S, Martin DM, Ausiello G, Brannetti B, Costantini A, Ferrè F, Maselli V, Via A, Cesareni G, Diella F, Superti-Furga G, Wyrwicz L, Ramu C, McGuigan C, Gudavalli R, Letunic I, Bork P, Rychlewski L, Küster B, Helmer-Citterich M, Hunter WN, Aasland R, Gibson TJ. Puntervoll P, et al. Among authors: via a. Nucleic Acids Res. 2003 Jul 1;31(13):3625-30. doi: 10.1093/nar/gkg545. Nucleic Acids Res. 2003. PMID: 12824381 Free PMC article.
101 results