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Tools and data services registry: a community effort to document bioinformatics resources.
Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P, Anthon C, Beard N, Berka K, Bolser D, Booth T, Bretaudeau A, Brezovsky J, Casadio R, Cesareni G, Coppens F, Cornell M, Cuccuru G, Davidsen K, Vedova GD, Dogan T, Doppelt-Azeroual O, Emery L, Gasteiger E, Gatter T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich M, Ienasescu H, Ioannidis V, Jespersen MC, Jimenez R, Juty N, Juvan P, Koch M, Laibe C, Li JW, Licata L, Mareuil F, Mičetić I, Friborg RM, Moretti S, Morris C, Möller S, Nenadic A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V, Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la Torre V, Uva P, Via A, Yachdav G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. Ison J, et al. Among authors: yachdav g. Nucleic Acids Res. 2016 Jan 4;44(D1):D38-47. doi: 10.1093/nar/gkv1116. Epub 2015 Nov 3. Nucleic Acids Res. 2016. PMID: 26538599 Free PMC article.
Anatomy of BioJS, an open source community for the life sciences.
Yachdav G, Goldberg T, Wilzbach S, Dao D, Shih I, Choudhary S, Crouch S, Franz M, García A, García LJ, Grüning BA, Inupakutika D, Sillitoe I, Thanki AS, Vieira B, Villaveces JM, Schneider MV, Lewis S, Pettifer S, Rost B, Corpas M. Yachdav G, et al. Elife. 2015 Jul 8;4:e07009. doi: 10.7554/eLife.07009. Elife. 2015. PMID: 26153621 Free PMC article.
PROFbval: predict flexible and rigid residues in proteins.
Schlessinger A, Yachdav G, Rost B. Schlessinger A, et al. Among authors: yachdav g. Bioinformatics. 2006 Apr 1;22(7):891-3. doi: 10.1093/bioinformatics/btl032. Epub 2006 Feb 2. Bioinformatics. 2006. PMID: 16455751
SNAP predicts effect of mutations on protein function.
Bromberg Y, Yachdav G, Rost B. Bromberg Y, et al. Among authors: yachdav g. Bioinformatics. 2008 Oct 15;24(20):2397-8. doi: 10.1093/bioinformatics/btn435. Epub 2008 Aug 30. Bioinformatics. 2008. PMID: 18757876 Free PMC article.
The PredictProtein server.
Rost B, Yachdav G, Liu J. Rost B, et al. Among authors: yachdav g. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W321-6. doi: 10.1093/nar/gkh377. Nucleic Acids Res. 2004. PMID: 15215403 Free PMC article.
HeatMapViewer: interactive display of 2D data in biology.
Yachdav G, Hecht M, Pasmanik-Chor M, Yeheskel A, Rost B. Yachdav G, et al. F1000Res. 2014 Feb 13;3:48. doi: 10.12688/f1000research.3-48.v1. eCollection 2014. F1000Res. 2014. PMID: 24860644 Free PMC article.
PredictProtein--an open resource for online prediction of protein structural and functional features.
Yachdav G, Kloppmann E, Kajan L, Hecht M, Goldberg T, Hamp T, Hönigschmid P, Schafferhans A, Roos M, Bernhofer M, Richter L, Ashkenazy H, Punta M, Schlessinger A, Bromberg Y, Schneider R, Vriend G, Sander C, Ben-Tal N, Rost B. Yachdav G, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W337-43. doi: 10.1093/nar/gku366. Epub 2014 May 5. Nucleic Acids Res. 2014. PMID: 24799431 Free PMC article.
Epitome: database of structure-inferred antigenic epitopes.
Schlessinger A, Ofran Y, Yachdav G, Rost B. Schlessinger A, et al. Among authors: yachdav g. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D777-80. doi: 10.1093/nar/gkj053. Nucleic Acids Res. 2006. PMID: 16381978 Free PMC article.
18 results