Naômé A - Search Results

1

Systematic hierarchical coarse-graining with the inverse Monte Carlo method.

Lyubartsev AP, Naômé A, Vercauteren DP, Laaksonen A. Lyubartsev AP, et al. Among authors: naome a. J Chem Phys. 2015 Dec 28;143(24):243120. doi: 10.1063/1.4934095. J Chem Phys. 2015. PMID: 26723605

2

A coarse-grained simulation study of the structures, energetics, and dynamics of linear and circular DNA with its ions.

Naômé A, Laaksonen A, Vercauteren DP. Naômé A, et al. J Chem Theory Comput. 2015 Jun 9;11(6):2813-26. doi: 10.1021/acs.jctc.5b00113. Epub 2015 May 14. J Chem Theory Comput. 2015. PMID: 26575574

We have studied the structural, energetics, and dynamical properties of a variety of linear and circular DNA fragments using a solvent-mediated coarse-grained (CG) model of DNA with explicit ions recently developed by us [Naome et al., J. ...We particularly e …

We have studied the structural, energetics, and dynamical properties of a variety of linear and circular DNA fragments using a …

3

A Solvent-Mediated Coarse-Grained Model of DNA Derived with the Systematic Newton Inversion Method.

Naômé A, Laaksonen A, Vercauteren DP. Naômé A, et al. J Chem Theory Comput. 2014 Aug 12;10(8):3541-9. doi: 10.1021/ct500222s. J Chem Theory Comput. 2014. PMID: 26588318

4

Molecular dynamics simulation of 8-oxoguanine containing DNA fragments reveals altered hydration and ion binding patterns.

Naômé A, Schyman P, Laaksonen A, Vercauteren DP. Naômé A, et al. J Phys Chem B. 2010 Apr 15;114(14):4789-801. doi: 10.1021/jp1000539. J Phys Chem B. 2010. PMID: 20307074

5

Correction to a solvent-mediated coarse-grained model of DNA derived with the systematic newton inversion method.

Naômé A, Laaksonen A, Vercauteren DP. Naômé A, et al. J Chem Theory Comput. 2015 Jun 9;11(6):2889. doi: 10.1021/acs.jctc.5b00403. J Chem Theory Comput. 2015. PMID: 26575578 No abstract available.

6

Lunaemycins, New Cyclic Hexapeptide Antibiotics from the Cave Moonmilk-Dweller Streptomyces lunaelactis MM109^T.

Martinet L, Naômé A, Rezende LCD, Tellatin D, Pignon B, Docquier JD, Sannio F, Baiwir D, Mazzucchelli G, Frédérich M, Rigali S. Martinet L, et al. Among authors: naome a. Int J Mol Sci. 2023 Jan 6;24(2):1114. doi: 10.3390/ijms24021114. Int J Mol Sci. 2023. PMID: 36674628 Free PMC article.

7

AURTHO: Autoregulation of transcription factors as facilitator of cis-acting element discovery.

Anderssen S, Naômé A, Jadot C, Brans A, Tocquin P, Rigali S. Anderssen S, et al. Among authors: naome a. Biochim Biophys Acta Gene Regul Mech. 2022 Jul;1865(5):194847. doi: 10.1016/j.bbagrm.2022.194847. Epub 2022 Jul 25. Biochim Biophys Acta Gene Regul Mech. 2022. PMID: 35901946 Free article.

8

On the Risks of Phylogeny-Based Strain Prioritization for Drug Discovery: Streptomyces lunaelactis as a Case Study.

Martinet L, Naômé A, Baiwir D, De Pauw E, Mazzucchelli G, Rigali S. Martinet L, et al. Among authors: naome a. Biomolecules. 2020 Jul 10;10(7):1027. doi: 10.3390/biom10071027. Biomolecules. 2020. PMID: 32664387 Free PMC article.

9

A Single Biosynthetic Gene Cluster Is Responsible for the Production of Bagremycin Antibiotics and Ferroverdin Iron Chelators.

Martinet L, Naômé A, Deflandre B, Maciejewska M, Tellatin D, Tenconi E, Smargiasso N, de Pauw E, van Wezel GP, Rigali S. Martinet L, et al. Among authors: naome a. mBio. 2019 Aug 13;10(4):e01230-19. doi: 10.1128/mBio.01230-19. mBio. 2019. PMID: 31409675 Free PMC article.

10

Complete Genome Sequence of Streptomyces lunaelactis MM109^T, Isolated from Cave Moonmilk Deposits.

Naômé A, Maciejewska M, Calusinska M, Martinet L, Anderssen S, Adam D, Tenconi E, Deflandre B, Coppieters W, Karim L, Hanikenne M, Baurain D, Delfosse P, van Wezel GP, Rigali S. Naômé A, et al. Genome Announc. 2018 May 24;6(21):e00435-18. doi: 10.1128/genomeA.00435-18. Genome Announc. 2018. PMID: 29798921 Free PMC article.

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