Qin Z - Search Results

1

Gene integrated set profile analysis: a context-based approach for inferring biological endpoints.

Kowalski J, Dwivedi B, Newman S, Switchenko JM, Pauly R, Gutman DA, Arora J, Gandhi K, Ainslie K, Doho G, Qin Z, Moreno CS, Rossi MR, Vertino PM, Lonial S, Bernal-Mizrachi L, Boise LH. Kowalski J, et al. Among authors: qin z. Nucleic Acids Res. 2016 Apr 20;44(7):e69. doi: 10.1093/nar/gkv1503. Epub 2016 Jan 29. Nucleic Acids Res. 2016. PMID: 26826710 Free PMC article.

2

Integrated analysis of whole-genome paired-end and mate-pair sequencing data for identifying genomic structural variations in multiple myeloma.

Yang R, Chen L, Newman S, Gandhi K, Doho G, Moreno CS, Vertino PM, Bernal-Mizarchi L, Lonial S, Boise LH, Rossi M, Kowalski J, Qin ZS. Yang R, et al. Cancer Inform. 2014 Sep 21;13(Suppl 2):49-53. doi: 10.4137/CIN.S13783. eCollection 2014. Cancer Inform. 2014. PMID: 25288879 Free PMC article. Review.

3

Base-resolution methylation patterns accurately predict transcription factor bindings in vivo.

Xu T, Li B, Zhao M, Szulwach KE, Street RC, Lin L, Yao B, Zhang F, Jin P, Wu H, Qin ZS. Xu T, et al. Nucleic Acids Res. 2015 Mar 11;43(5):2757-66. doi: 10.1093/nar/gkv151. Epub 2015 Feb 26. Nucleic Acids Res. 2015. PMID: 25722376 Free PMC article.

4

Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates.

Wu H, Xu T, Feng H, Chen L, Li B, Yao B, Qin Z, Jin P, Conneely KN. Wu H, et al. Among authors: qin z. Nucleic Acids Res. 2015 Dec 2;43(21):e141. doi: 10.1093/nar/gkv715. Epub 2015 Jul 15. Nucleic Acids Res. 2015. PMID: 26184873 Free PMC article.

5

Molecular signatures associated with ZIKV exposure in human cortical neural progenitors.

Zhang F, Hammack C, Ogden SC, Cheng Y, Lee EM, Wen Z, Qian X, Nguyen HN, Li Y, Yao B, Xu M, Xu T, Chen L, Wang Z, Feng H, Huang WK, Yoon KJ, Shan C, Huang L, Qin Z, Christian KM, Shi PY, Xu M, Xia M, Zheng W, Wu H, Song H, Tang H, Ming GL, Jin P. Zhang F, et al. Among authors: qin z. Nucleic Acids Res. 2016 Oct 14;44(18):8610-8620. doi: 10.1093/nar/gkw765. Epub 2016 Aug 31. Nucleic Acids Res. 2016. PMID: 27580721 Free PMC article.

6

Signatures of somatic mutations and gene expression from p16INK4A positive head and neck squamous cell carcinomas (HNSCC).

Saba NF, Dinasarapu AR, Magliocca KR, Dwivedi B, Seby S, Qin ZS, Patel M, Griffith CC, Wang X, El-Deiry M, Steuer CE, Kowalski J, Shin DM, Zwick ME, Chen ZG. Saba NF, et al. PLoS One. 2020 Sep 28;15(9):e0238497. doi: 10.1371/journal.pone.0238497. eCollection 2020. PLoS One. 2020. PMID: 32986729 Free PMC article.

7

Pan-cancer analysis of pathway-based gene expression pattern at the individual level reveals biomarkers of clinical prognosis.

Su K, Yu Q, Shen R, Sun SY, Moreno CS, Li X, Qin ZS. Su K, et al. Cell Rep Methods. 2021 Aug 23;1(4):100050. doi: 10.1016/j.crmeth.2021.100050. Epub 2021 Jul 23. Cell Rep Methods. 2021. PMID: 34671755 Free PMC article.

8

Omicseq: a web-based search engine for exploring omics datasets.

Sun X, Pittard WS, Xu T, Chen L, Zwick ME, Jiang X, Wang F, Qin ZS. Sun X, et al. Nucleic Acids Res. 2017 Jul 3;45(W1):W445-W452. doi: 10.1093/nar/gkx258. Nucleic Acids Res. 2017. PMID: 28402462 Free PMC article.

9

Regulatory annotation of genomic intervals based on tissue-specific expression QTLs.

Xu T, Jin P, Qin ZS. Xu T, et al. Bioinformatics. 2020 Feb 1;36(3):690-697. doi: 10.1093/bioinformatics/btz669. Bioinformatics. 2020. PMID: 31504167 Free PMC article.

10

UALCAN: An update to the integrated cancer data analysis platform.

Chandrashekar DS, Karthikeyan SK, Korla PK, Patel H, Shovon AR, Athar M, Netto GJ, Qin ZS, Kumar S, Manne U, Creighton CJ, Varambally S. Chandrashekar DS, et al. Neoplasia. 2022 Mar;25:18-27. doi: 10.1016/j.neo.2022.01.001. Epub 2022 Jan 22. Neoplasia. 2022. PMID: 35078134 Free PMC article.

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