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Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.
Ma L, Chen Z, Huang da W, Kutty G, Ishihara M, Wang H, Abouelleil A, Bishop L, Davey E, Deng R, Deng X, Fan L, Fantoni G, Fitzgerald M, Gogineni E, Goldberg JM, Handley G, Hu X, Huber C, Jiao X, Jones K, Levin JZ, Liu Y, Macdonald P, Melnikov A, Raley C, Sassi M, Sherman BT, Song X, Sykes S, Tran B, Walsh L, Xia Y, Yang J, Young S, Zeng Q, Zheng X, Stephens R, Nusbaum C, Birren BW, Azadi P, Lempicki RA, Cuomo CA, Kovacs JA. Ma L, et al. Among authors: yang j. Nat Commun. 2016 Feb 22;7:10740. doi: 10.1038/ncomms10740. Nat Commun. 2016. PMID: 26899007 Free PMC article.
Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis.
Ma L, Huang DW, Cuomo CA, Sykes S, Fantoni G, Das B, Sherman BT, Yang J, Huber C, Xia Y, Davey E, Kutty G, Bishop L, Sassi M, Lempicki RA, Kovacs JA. Ma L, et al. Among authors: yang j. FASEB J. 2013 May;27(5):1962-72. doi: 10.1096/fj.12-224444. Epub 2013 Feb 7. FASEB J. 2013. PMID: 23392351 Free PMC article.
Clearance of Pneumocystis murina infection is not dependent on MyD88.
Ripamonti C, Bishop LR, Yang J, Lempicki RA, Kovacs JA. Ripamonti C, et al. Among authors: yang j. Microbes Infect. 2014 Jun;16(6):522-7. doi: 10.1016/j.micinf.2014.03.005. Epub 2014 Mar 25. Microbes Infect. 2014. PMID: 24680862 Free PMC article.
Extracting biological meaning from large gene lists with DAVID.
Huang da W, Sherman BT, Zheng X, Yang J, Imamichi T, Stephens R, Lempicki RA. Huang da W, et al. Among authors: yang j. Curr Protoc Bioinformatics. 2009 Sep;Chapter 13:Unit 13.11. doi: 10.1002/0471250953.bi1311s27. Curr Protoc Bioinformatics. 2009. PMID: 19728287
The HIV-1 envelope protein gp120 impairs B cell proliferation by inducing TGF-β1 production and FcRL4 expression.
Jelicic K, Cimbro R, Nawaz F, Huang da W, Zheng X, Yang J, Lempicki RA, Pascuccio M, Van Ryk D, Schwing C, Hiatt J, Okwara N, Wei D, Roby G, David A, Hwang IY, Kehrl JH, Arthos J, Cicala C, Fauci AS. Jelicic K, et al. Among authors: yang j. Nat Immunol. 2013 Dec;14(12):1256-65. doi: 10.1038/ni.2746. Epub 2013 Oct 27. Nat Immunol. 2013. PMID: 24162774 Free PMC article.
HIV infection and antiretroviral therapy have divergent effects on mitochondria in adipose tissue.
Morse CG, Voss JG, Rakocevic G, McLaughlin M, Vinton CL, Huber C, Hu X, Yang J, Huang da W, Logun C, Danner RL, Rangel ZG, Munson PJ, Orenstein JM, Rushing EJ, Lempicki RA, Dalakas MC, Kovacs JA. Morse CG, et al. Among authors: yang j. J Infect Dis. 2012 Jun 15;205(12):1778-87. doi: 10.1093/infdis/jis101. Epub 2012 Apr 3. J Infect Dis. 2012. PMID: 22476717 Free PMC article.
Interleukin-27 treated human macrophages induce the expression of novel microRNAs which may mediate anti-viral properties.
Swaminathan S, Hu X, Zheng X, Kriga Y, Shetty J, Zhao Y, Stephens R, Tran B, Baseler MW, Yang J, Lempicki RA, Huang D, Lane HC, Imamichi T. Swaminathan S, et al. Among authors: yang j. Biochem Biophys Res Commun. 2013 May 3;434(2):228-34. doi: 10.1016/j.bbrc.2013.03.046. Epub 2013 Mar 25. Biochem Biophys Res Commun. 2013. PMID: 23535375 Free PMC article.
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