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A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage.
Nat Commun. 2016 Feb 25;7:8674. doi: 10.1038/ncomms9674.
Nat Commun. 2016.
PMID: 26912388
Free PMC article.
A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis.
Castro-González C, Luengo-Oroz MA, Duloquin L, Savy T, Rizzi B, Desnoulez S, Doursat R, Kergosien YL, Ledesma-Carbayo MJ, Bourgine P, Peyriéras N, Santos A.
Castro-González C, et al. Among authors: desnoulez s.
PLoS Comput Biol. 2014 Jun 19;10(6):e1003670. doi: 10.1371/journal.pcbi.1003670. eCollection 2014 Jun.
PLoS Comput Biol. 2014.
PMID: 24945246
Free PMC article.
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Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis.
Recher G, Jouralet J, Brombin A, Heuzé A, Mugniery E, Hermel JM, Desnoulez S, Savy T, Herbomel P, Bourrat F, Peyriéras N, Jamen F, Joly JS.
Recher G, et al. Among authors: desnoulez s.
Development. 2013 Dec;140(24):4860-9. doi: 10.1242/dev.099010. Epub 2013 Nov 6.
Development. 2013.
PMID: 24198278
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Towards a digital model of zebrafish embryogenesis. Integration of cell tracking and gene expression quantification.
Castro-Gonzalez C, Luengo-Oroz MA, Douloquin L, Savy T, Melani C, Desnoulez S, Ledesma-Carbayo MJ, Bourginey P, Peyrieras N, Santos A.
Castro-Gonzalez C, et al. Among authors: desnoulez s.
Annu Int Conf IEEE Eng Med Biol Soc. 2010;2010:5520-3. doi: 10.1109/IEMBS.2010.5626769.
Annu Int Conf IEEE Eng Med Biol Soc. 2010.
PMID: 21096468
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Image processing challenges in the creation of spatiotemporal gene expression atlases of developing embryos.
Castro C, Luengo-Oroz MÁ, Douloquin L, Savy T, Melani C, Desnoulez S, Bourgine P, Peyriéras N, Ledesma-Carbayo MJ, Santos A.
Castro C, et al. Among authors: desnoulez s.
Annu Int Conf IEEE Eng Med Biol Soc. 2011;2011:6841-4. doi: 10.1109/IEMBS.2011.6091687.
Annu Int Conf IEEE Eng Med Biol Soc. 2011.
PMID: 22255910
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An automatic quantification and registration strategy to create a gene expression atlas of zebrafish embryogenesis.
Castro C, Luengo-Oroz MA, Desnoulez S, Duloquin L, Fernandez-de-Manuel L, Montagna S, Ledesma-Carbayo MJ, Bourgine P, Peyrieras N, Santos A.
Castro C, et al. Among authors: desnoulez s.
Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:1469-72. doi: 10.1109/IEMBS.2009.5332436.
Annu Int Conf IEEE Eng Med Biol Soc. 2009.
PMID: 19963501
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A noncanonical autophagy is involved in the transfer of Plasmodium-microvesicles to astrocytes.
Leleu I, Genete D, Desnoulez SS, Saidi N, Brodin P, Lafont F, Tomavo S, Pied S.
Leleu I, et al. Among authors: desnoulez ss.
Autophagy. 2022 Jul;18(7):1583-1598. doi: 10.1080/15548627.2021.1993704. Epub 2021 Nov 6.
Autophagy. 2022.
PMID: 34747313
Free PMC article.
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