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A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage.
Faure E, Savy T, Rizzi B, Melani C, Stašová O, Fabrèges D, Špir R, Hammons M, Čúnderlík R, Recher G, Lombardot B, Duloquin L, Colin I, Kollár J, Desnoulez S, Affaticati P, Maury B, Boyreau A, Nief JY, Calvat P, Vernier P, Frain M, Lutfalla G, Kergosien Y, Suret P, Remešíková M, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P. Faure E, et al. Nat Commun. 2016 Feb 25;7:8674. doi: 10.1038/ncomms9674. Nat Commun. 2016. PMID: 26912388 Free PMC article.
3D+t morphological processing: applications to embryogenesis image analysis.
Luengo-Oroz MA, Pastor-Escuredo D, Castro-Gonzalez C, Faure E, Savy T, Lombardot B, Rubio-Guivernau JL, Duloquin L, Ledesma-Carbayo MJ, Bourgine P, Peyrieras N, Santos A. Luengo-Oroz MA, et al. Among authors: faure e. IEEE Trans Image Process. 2012 Aug;21(8):3518-30. doi: 10.1109/TIP.2012.2197007. Epub 2012 May 1. IEEE Trans Image Process. 2012. PMID: 22562755
Methodology for reconstructing early zebrafish development from in vivo multiphoton microscopy.
Luengo-Oroz MA, Rubio-Guivernau JL, Faure E, Savy T, Duloquin L, Olivier N, Pastor D, Ledesma-Carbayo M, Débarre D, Bourgine P, Beaurepaire E, Peyriéras N, Santos A. Luengo-Oroz MA, et al. Among authors: faure e. IEEE Trans Image Process. 2012 Apr;21(4):2335-40. doi: 10.1109/TIP.2011.2177911. Epub 2011 Dec 1. IEEE Trans Image Process. 2012. PMID: 22155959 Free article.
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets.
Brozovic M, Dantec C, Dardaillon J, Dauga D, Faure E, Gineste M, Louis A, Naville M, Nitta KR, Piette J, Reeves W, Scornavacca C, Simion P, Vincentelli R, Bellec M, Aicha SB, Fagotto M, Guéroult-Bellone M, Haeussler M, Jacox E, Lowe EK, Mendez M, Roberge A, Stolfi A, Yokomori R, Brown CT, Cambillau C, Christiaen L, Delsuc F, Douzery E, Dumollard R, Kusakabe T, Nakai K, Nishida H, Satou Y, Swalla B, Veeman M, Volff JN, Lemaire P. Brozovic M, et al. Among authors: faure e. Nucleic Acids Res. 2018 Jan 4;46(D1):D718-D725. doi: 10.1093/nar/gkx1108. Nucleic Acids Res. 2018. PMID: 29149270 Free PMC article.
ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates.
Dardaillon J, Dauga D, Simion P, Faure E, Onuma TA, DeBiasse MB, Louis A, Nitta KR, Naville M, Besnardeau L, Reeves W, Wang K, Fagotto M, Guéroult-Bellone M, Fujiwara S, Dumollard R, Veeman M, Volff JN, Roest Crollius H, Douzery E, Ryan JF, Davidson B, Nishida H, Dantec C, Lemaire P. Dardaillon J, et al. Among authors: faure e. Nucleic Acids Res. 2020 Jan 8;48(D1):D668-D675. doi: 10.1093/nar/gkz955. Nucleic Acids Res. 2020. PMID: 31680137 Free PMC article.
A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control.
Refahi Y, Zardilis A, Michelin G, Wightman R, Leggio B, Legrand J, Faure E, Vachez L, Armezzani A, Risson AE, Zhao F, Das P, Prunet N, Meyerowitz EM, Godin C, Malandain G, Jönsson H, Traas J. Refahi Y, et al. Among authors: faure e. Dev Cell. 2021 Feb 22;56(4):540-556.e8. doi: 10.1016/j.devcel.2021.01.019. Dev Cell. 2021. PMID: 33621494 Free PMC article.
Transcriptional regulation of the Ciona Gsx gene in the neural plate.
Hudson C, Esposito R, Palladino A, Staiano L, Ferrier D, Faure E, Lemaire P, Yasuo H, Spagnuolo A. Hudson C, et al. Among authors: faure e. Dev Biol. 2019 Apr 15;448(2):88-100. doi: 10.1016/j.ydbio.2018.12.013. Epub 2018 Dec 21. Dev Biol. 2019. PMID: 30583796 Free article.
304 results