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A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage.
Faure E, Savy T, Rizzi B, Melani C, Stašová O, Fabrèges D, Špir R, Hammons M, Čúnderlík R, Recher G, Lombardot B, Duloquin L, Colin I, Kollár J, Desnoulez S, Affaticati P, Maury B, Boyreau A, Nief JY, Calvat P, Vernier P, Frain M, Lutfalla G, Kergosien Y, Suret P, Remešíková M, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P. Faure E, et al. Among authors: lombardot b. Nat Commun. 2016 Feb 25;7:8674. doi: 10.1038/ncomms9674. Nat Commun. 2016. PMID: 26912388 Free PMC article.
Cells tracking in a live zebrafish embryo.
Melani C, Campana M, Lombardot B, Rizzi B, Veronesi F, Zanella C, Bourgine P, Mikula K, Peyriéras N, Sarti A. Melani C, et al. Among authors: lombardot b. Annu Int Conf IEEE Eng Med Biol Soc. 2007;2007:1631-4. doi: 10.1109/IEMBS.2007.4352619. Annu Int Conf IEEE Eng Med Biol Soc. 2007. PMID: 18002285
3D+t morphological processing: applications to embryogenesis image analysis.
Luengo-Oroz MA, Pastor-Escuredo D, Castro-Gonzalez C, Faure E, Savy T, Lombardot B, Rubio-Guivernau JL, Duloquin L, Ledesma-Carbayo MJ, Bourgine P, Peyrieras N, Santos A. Luengo-Oroz MA, et al. Among authors: lombardot b. IEEE Trans Image Process. 2012 Aug;21(8):3518-30. doi: 10.1109/TIP.2012.2197007. Epub 2012 May 1. IEEE Trans Image Process. 2012. PMID: 22562755
Live-cell lipid biochemistry reveals a role of diacylglycerol side-chain composition for cellular lipid dynamics and protein affinities.
Schuhmacher M, Grasskamp AT, Barahtjan P, Wagner N, Lombardot B, Schuhmacher JS, Sala P, Lohmann A, Henry I, Shevchenko A, Coskun Ü, Walter AM, Nadler A. Schuhmacher M, et al. Among authors: lombardot b. Proc Natl Acad Sci U S A. 2020 Apr 7;117(14):7729-7738. doi: 10.1073/pnas.1912684117. Epub 2020 Mar 25. Proc Natl Acad Sci U S A. 2020. PMID: 32213584 Free PMC article.
Neocortical Expansion Due to Increased Proliferation of Basal Progenitors Is Linked to Changes in Their Morphology.
Kalebic N, Gilardi C, Stepien B, Wilsch-Bräuninger M, Long KR, Namba T, Florio M, Langen B, Lombardot B, Shevchenko A, Kilimann MW, Kawasaki H, Wimberger P, Huttner WB. Kalebic N, et al. Among authors: lombardot b. Cell Stem Cell. 2019 Apr 4;24(4):535-550.e9. doi: 10.1016/j.stem.2019.02.017. Epub 2019 Mar 21. Cell Stem Cell. 2019. PMID: 30905618 Free article.
Identification of novel compounds inhibiting chikungunya virus-induced cell death by high throughput screening of a kinase inhibitor library.
Cruz DJ, Bonotto RM, Gomes RG, da Silva CT, Taniguchi JB, No JH, Lombardot B, Schwartz O, Hansen MA, Freitas-Junior LH. Cruz DJ, et al. Among authors: lombardot b. PLoS Negl Trop Dis. 2013 Oct 31;7(10):e2471. doi: 10.1371/journal.pntd.0002471. eCollection 2013. PLoS Negl Trop Dis. 2013. PMID: 24205414 Free PMC article.