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The life history of neochromosomes revealed.
Papenfuss AT, Thomas DM. Papenfuss AT, et al. Mol Cell Oncol. 2015 Jan 23;2(4):e1000698. doi: 10.1080/23723556.2014.1000698. eCollection 2015 Oct-Dec. Mol Cell Oncol. 2015. PMID: 27308490 Free PMC article.
The architecture and evolution of cancer neochromosomes.
Garsed DW, Marshall OJ, Corbin VD, Hsu A, Di Stefano L, Schröder J, Li J, Feng ZP, Kim BW, Kowarsky M, Lansdell B, Brookwell R, Myklebost O, Meza-Zepeda L, Holloway AJ, Pedeutour F, Choo KH, Damore MA, Deans AJ, Papenfuss AT, Thomas DM. Garsed DW, et al. Among authors: papenfuss at. Cancer Cell. 2014 Nov 10;26(5):653-67. doi: 10.1016/j.ccell.2014.09.010. Epub 2014 Nov 10. Cancer Cell. 2014. PMID: 25517748 Free article.
MTOR signaling orchestrates stress-induced mutagenesis, facilitating adaptive evolution in cancer.
Cipponi A, Goode DL, Bedo J, McCabe MJ, Pajic M, Croucher DR, Rajal AG, Junankar SR, Saunders DN, Lobachevsky P, Papenfuss AT, Nessem D, Nobis M, Warren SC, Timpson P, Cowley M, Vargas AC, Qiu MR, Generali DG, Keerthikumar S, Nguyen U, Corcoran NM, Long GV, Blay JY, Thomas DM. Cipponi A, et al. Among authors: papenfuss at. Science. 2020 Jun 5;368(6495):1127-1131. doi: 10.1126/science.aau8768. Science. 2020. PMID: 32499442
Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads.
Schröder J, Hsu A, Boyle SE, Macintyre G, Cmero M, Tothill RW, Johnstone RW, Shackleton M, Papenfuss AT. Schröder J, et al. Among authors: papenfuss at. Bioinformatics. 2014 Apr 15;30(8):1064-1072. doi: 10.1093/bioinformatics/btt767. Epub 2014 Jan 2. Bioinformatics. 2014. PMID: 24389656 Free PMC article.
Socrates has single-nucleotide resolution, identifies micro-homologies and untemplated sequence at break points, has high sensitivity and high specificity and takes advantage of parallelism for efficient use of resources. ...AVAILABILITY AND IMPLEMENTATION: Socrates is rel …
Socrates has single-nucleotide resolution, identifies micro-homologies and untemplated sequence at break points, has high sensitivity …
Clinical cancer genomic analysis: data engineering required.
Doig K, Papenfuss AT, Fox S. Doig K, et al. Among authors: papenfuss at. Lancet Oncol. 2015 Sep;16(9):1015-1017. doi: 10.1016/S1470-2045(15)00195-3. Lancet Oncol. 2015. PMID: 26370340 No abstract available.
Transmissible cancers in an evolutionary context.
Ujvari B, Papenfuss AT, Belov K. Ujvari B, et al. Among authors: papenfuss at. Bioessays. 2016 Jul;38 Suppl 1:S14-23. doi: 10.1002/bies.201670904. Bioessays. 2016. PMID: 27417118 Review.
188 results