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Mobile genes in the human microbiome are structured from global to individual scales.
Brito IL, Yilmaz S, Huang K, Xu L, Jupiter SD, Jenkins AP, Naisilisili W, Tamminen M, Smillie CS, Wortman JR, Birren BW, Xavier RJ, Blainey PC, Singh AK, Gevers D, Alm EJ. Brito IL, et al. Among authors: blainey pc. Nature. 2016 Jul 21;535(7612):435-439. doi: 10.1038/nature18927. Epub 2016 Jul 13. Nature. 2016. PMID: 27409808 Free PMC article.
A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients.
Hall AB, Yassour M, Sauk J, Garner A, Jiang X, Arthur T, Lagoudas GK, Vatanen T, Fornelos N, Wilson R, Bertha M, Cohen M, Garber J, Khalili H, Gevers D, Ananthakrishnan AN, Kugathasan S, Lander ES, Blainey P, Vlamakis H, Xavier RJ, Huttenhower C. Hall AB, et al. Genome Med. 2017 Nov 28;9(1):103. doi: 10.1186/s13073-017-0490-5. Genome Med. 2017. PMID: 29183332 Free PMC article.
An immune-cell signature of bacterial sepsis.
Reyes M, Filbin MR, Bhattacharyya RP, Billman K, Eisenhaure T, Hung DT, Levy BD, Baron RM, Blainey PC, Goldberg MB, Hacohen N. Reyes M, et al. Among authors: blainey pc. Nat Med. 2020 Mar;26(3):333-340. doi: 10.1038/s41591-020-0752-4. Epub 2020 Feb 17. Nat Med. 2020. PMID: 32066974 Free PMC article.
Pooled genetic perturbation screens with image-based phenotypes.
Feldman D, Funk L, Le A, Carlson RJ, Leiken MD, Tsai F, Soong B, Singh A, Blainey PC. Feldman D, et al. Among authors: blainey pc. Nat Protoc. 2022 Feb;17(2):476-512. doi: 10.1038/s41596-021-00653-8. Epub 2022 Jan 12. Nat Protoc. 2022. PMID: 35022620 Free PMC article. Review.
The phenotypic landscape of essential human genes.
Funk L, Su KC, Ly J, Feldman D, Singh A, Moodie B, Blainey PC, Cheeseman IM. Funk L, et al. Among authors: blainey pc. Cell. 2022 Nov 23;185(24):4634-4653.e22. doi: 10.1016/j.cell.2022.10.017. Epub 2022 Nov 7. Cell. 2022. PMID: 36347254 Free PMC article.
Pooled genetic screens with image-based profiling.
Walton RT, Singh A, Blainey PC. Walton RT, et al. Among authors: blainey pc. Mol Syst Biol. 2022 Nov;18(11):e10768. doi: 10.15252/msb.202110768. Mol Syst Biol. 2022. PMID: 36366905 Free PMC article. Review.
Author Correction: Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants.
Welch NL, Zhu M, Hua C, Weller J, Mirhashemi ME, Nguyen TG, Mantena S, Bauer MR, Shaw BM, Ackerman CM, Thakku SG, Tse MW, Kehe J, Uwera MM, Eversley JS, Bielwaski DA, McGrath G, Braidt J, Johnson J, Cerrato F, Moreno GK, Krasilnikova LA, Petros BA, Gionet GL, King E, Huard RC, Jalbert SK, Cleary ML, Fitzgerald NA, Gabriel SB, Gallagher GR, Smole SC, Madoff LC, Brown CM, Keller MW, Wilson MM, Kirby MK, Barnes JR, Park DJ, Siddle KJ, Happi CT, Hung DT, Springer M, MacInnis BL, Lemieux JE, Rosenberg E, Branda JA, Blainey PC, Sabeti PC, Myhrvold C. Welch NL, et al. Among authors: blainey pc. Nat Med. 2024 Jan;30(1):307. doi: 10.1038/s41591-023-02684-y. Nat Med. 2024. PMID: 37946059 Free PMC article. No abstract available.
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