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mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos.
Elife. 2016 Jul 30;5:e16955. doi: 10.7554/eLife.16955.
Elife. 2016.
PMID: 27474798
Free PMC article.
Early genome activation in Drosophila is extensive with an initial tendency for aborted transcripts and retained introns.
Kwasnieski JC, Orr-Weaver TL, Bartel DP.
Kwasnieski JC, et al.
Genome Res. 2019 Jul;29(7):1188-1197. doi: 10.1101/gr.242164.118. Epub 2019 Jun 24.
Genome Res. 2019.
PMID: 31235656
Free PMC article.
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Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants.
Mogno I, Kwasnieski JC, Cohen BA.
Mogno I, et al. Among authors: kwasnieski jc.
Genome Res. 2013 Nov;23(11):1908-15. doi: 10.1101/gr.157891.113. Epub 2013 Aug 6.
Genome Res. 2013.
PMID: 23921661
Free PMC article.
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High-throughput functional testing of ENCODE segmentation predictions.
Kwasnieski JC, Fiore C, Chaudhari HG, Cohen BA.
Kwasnieski JC, et al.
Genome Res. 2014 Oct;24(10):1595-602. doi: 10.1101/gr.173518.114. Epub 2014 Jul 17.
Genome Res. 2014.
PMID: 25035418
Free PMC article.
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Complex effects of nucleotide variants in a mammalian cis-regulatory element.
Kwasnieski JC, Mogno I, Myers CA, Corbo JC, Cohen BA.
Kwasnieski JC, et al.
Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19498-503. doi: 10.1073/pnas.1210678109. Epub 2012 Nov 5.
Proc Natl Acad Sci U S A. 2012.
PMID: 23129659
Free PMC article.
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A Simple Grammar Defines Activating and Repressing cis-Regulatory Elements in Photoreceptors.
White MA, Kwasnieski JC, Myers CA, Shen SQ, Corbo JC, Cohen BA.
White MA, et al. Among authors: kwasnieski jc.
Cell Rep. 2016 Oct 25;17(5):1247-1254. doi: 10.1016/j.celrep.2016.09.066.
Cell Rep. 2016.
PMID: 27783940
Free PMC article.
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Overcoming Immunological Challenges Limiting Capsid-Mediated Gene Therapy With Machine Learning.
Wec AZ, Lin KS, Kwasnieski JC, Sinai S, Gerold J, Kelsic ED.
Wec AZ, et al. Among authors: kwasnieski jc.
Front Immunol. 2021 Apr 27;12:674021. doi: 10.3389/fimmu.2021.674021. eCollection 2021.
Front Immunol. 2021.
PMID: 33986759
Free PMC article.
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