Milenković T - Search Results

1

Genome-wide profiling of 24 hr diel rhythmicity in the water flea, Daphnia pulex: network analysis reveals rhythmic gene expression and enhances functional gene annotation.

Rund SS, Yoo B, Alam C, Green T, Stephens MT, Zeng E, George GF, Sheppard AD, Duffield GE, Milenković T, Pfrender ME. Rund SS, et al. Among authors: milenkovic t. BMC Genomics. 2016 Aug 18;17:653. doi: 10.1186/s12864-016-2998-2. BMC Genomics. 2016. PMID: 27538446 Free PMC article.

2

Improving Identification of Key Players in Aging via Network De-Noising and Core Inference.

Yoo B, Faisal FE, Chen H, Milenkovic T. Yoo B, et al. Among authors: milenkovic t. IEEE/ACM Trans Comput Biol Bioinform. 2017 Sep-Oct;14(5):1056-1069. doi: 10.1109/TCBB.2015.2495170. Epub 2015 Oct 26. IEEE/ACM Trans Comput Biol Bioinform. 2017. PMID: 26529776

3

Data-driven biological network alignment that uses topological, sequence, and functional information.

Gu S, Milenković T. Gu S, et al. Among authors: milenkovic t. BMC Bioinformatics. 2021 Jan 29;22(1):34. doi: 10.1186/s12859-021-03971-6. BMC Bioinformatics. 2021. PMID: 33514304 Free PMC article.

4

Improved supervised prediction of aging-related genes via weighted dynamic network analysis.

Li Q, Newaz K, Milenković T. Li Q, et al. Among authors: milenkovic t. BMC Bioinformatics. 2021 Oct 25;22(1):520. doi: 10.1186/s12859-021-04439-3. BMC Bioinformatics. 2021. PMID: 34696741 Free PMC article.

5

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets.

Ho H, Milenković T, Memisević V, Aruri J, Przulj N, Ganesan AK. Ho H, et al. Among authors: milenkovic t. BMC Syst Biol. 2010 Jun 15;4:84. doi: 10.1186/1752-0509-4-84. BMC Syst Biol. 2010. PMID: 20550706 Free PMC article.

6

Dynamic networks reveal key players in aging.

Faisal FE, Milenković T. Faisal FE, et al. Among authors: milenkovic t. Bioinformatics. 2014 Jun 15;30(12):1721-9. doi: 10.1093/bioinformatics/btu089. Epub 2014 Feb 18. Bioinformatics. 2014. PMID: 24554629

7

Proper evaluation of alignment-free network comparison methods.

Yaveroğlu ÖN, Milenković T, Pržulj N. Yaveroğlu ÖN, et al. Among authors: milenkovic t. Bioinformatics. 2015 Aug 15;31(16):2697-704. doi: 10.1093/bioinformatics/btv170. Epub 2015 Mar 24. Bioinformatics. 2015. PMID: 25810431 Free PMC article.

8

Exploring the structure and function of temporal networks with dynamic graphlets.

Hulovatyy Y, Chen H, Milenković T. Hulovatyy Y, et al. Among authors: milenkovic t. Bioinformatics. 2015 Jun 15;31(12):i171-80. doi: 10.1093/bioinformatics/btv227. Bioinformatics. 2015. PMID: 26072480 Free PMC article.

9

Local versus global biological network alignment.

Meng L, Striegel A, Milenković T. Meng L, et al. Among authors: milenkovic t. Bioinformatics. 2016 Oct 15;32(20):3155-3164. doi: 10.1093/bioinformatics/btw348. Epub 2016 Jun 29. Bioinformatics. 2016. PMID: 27357169 Free PMC article.

10

From homogeneous to heterogeneous network alignment via colored graphlets.

Gu S, Johnson J, Faisal FE, Milenković T. Gu S, et al. Among authors: milenkovic t. Sci Rep. 2018 Aug 21;8(1):12524. doi: 10.1038/s41598-018-30831-w. Sci Rep. 2018. PMID: 30131590 Free PMC article.

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