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An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits.
Routtu J, Hall MD, Albere B, Beisel C, Bergeron RD, Chaturvedi A, Choi JH, Colbourne J, De Meester L, Stephens MT, Stelzer CP, Solorzano E, Thomas WK, Pfrender ME, Ebert D. Routtu J, et al. Among authors: pfrender me. BMC Genomics. 2014 Nov 27;15(1):1033. doi: 10.1186/1471-2164-15-1033. BMC Genomics. 2014. PMID: 25431334 Free PMC article.
Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.
Liu Y, Bhagwate A, Winham SJ, Stephens MT, Harker BW, McDonough SJ, Stallings-Mann ML, Heinzen EP, Vierkant RA, Hoskin TL, Frost MH, Carter JM, Pfrender ME, Littlepage L, Radisky DC, Cunningham JM, Degnim AC, Wang C. Liu Y, et al. Among authors: pfrender me. BMC Med Genomics. 2022 Sep 16;15(1):195. doi: 10.1186/s12920-022-01355-0. BMC Med Genomics. 2022. PMID: 36114500 Free PMC article.
The ecoresponsive genome of Daphnia pulex.
Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL. Colbourne JK, et al. Among authors: pfrender me. Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761. Science. 2011. PMID: 21292972 Free PMC article.
A New Reference Genome Assembly for the Microcrustacean Daphnia pulex.
Ye Z, Xu S, Spitze K, Asselman J, Jiang X, Ackerman MS, Lopez J, Harker B, Raborn RT, Thomas WK, Ramsdell J, Pfrender ME, Lynch M. Ye Z, et al. Among authors: pfrender me. G3 (Bethesda). 2017 May 5;7(5):1405-1416. doi: 10.1534/g3.116.038638. G3 (Bethesda). 2017. PMID: 28235826 Free PMC article.
89 results