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Identifying lineage effects when controlling for population structure improves power in bacterial association studies.
Earle SG, Wu CH, Charlesworth J, Stoesser N, Gordon NC, Walker TM, Spencer CCA, Iqbal Z, Clifton DA, Hopkins KL, Woodford N, Smith EG, Ismail N, Llewelyn MJ, Peto TE, Crook DW, McVean G, Walker AS, Wilson DJ. Earle SG, et al. Among authors: clifton da. Nat Microbiol. 2016 Apr 4;1:16041. doi: 10.1038/nmicrobiol.2016.41. Nat Microbiol. 2016. PMID: 27572646 Free PMC article.
Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study.
Walker TM, Kohl TA, Omar SV, Hedge J, Del Ojo Elias C, Bradley P, Iqbal Z, Feuerriegel S, Niehaus KE, Wilson DJ, Clifton DA, Kapatai G, Ip CLC, Bowden R, Drobniewski FA, Allix-Béguec C, Gaudin C, Parkhill J, Diel R, Supply P, Crook DW, Smith EG, Walker AS, Ismail N, Niemann S, Peto TEA; Modernizing Medical Microbiology (MMM) Informatics Group. Walker TM, et al. Among authors: clifton da. Lancet Infect Dis. 2015 Oct;15(10):1193-1202. doi: 10.1016/S1473-3099(15)00062-6. Epub 2015 Jun 23. Lancet Infect Dis. 2015. PMID: 26116186 Free PMC article.
DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis.
Yang Y, Walker TM, Walker AS, Wilson DJ, Peto TEA, Crook DW, Shamout F; CRyPTIC Consortium; Zhu T, Clifton DA. Yang Y, et al. Among authors: clifton da. Bioinformatics. 2019 Sep 15;35(18):3240-3249. doi: 10.1093/bioinformatics/btz067. Bioinformatics. 2019. PMID: 30689732 Free PMC article.
Validating a 14-Drug Microtiter Plate Containing Bedaquiline and Delamanid for Large-Scale Research Susceptibility Testing of Mycobacterium tuberculosis.
Rancoita PMV, Cugnata F, Gibertoni Cruz AL, Borroni E, Hoosdally SJ, Walker TM, Grazian C, Davies TJ, Peto TEA, Crook DW, Fowler PW, Cirillo DM; CRyPTIC Consortiumfor the CRyPTIC Consortiumfor the CRyPTIC Consortium. Rancoita PMV, et al. Antimicrob Agents Chemother. 2018 Aug 27;62(9):e00344-18. doi: 10.1128/AAC.00344-18. Print 2018 Sep. Antimicrob Agents Chemother. 2018. PMID: 29941636 Free PMC article.
A crowd of BashTheBug volunteers reproducibly and accurately measure the minimum inhibitory concentrations of 13 antitubercular drugs from photographs of 96-well broth microdilution plates.
Fowler PW, Wright C, Spiers H, Zhu T, Baeten EML, Hoosdally SW, Gibertoni Cruz AL, Roohi A, Kouchaki S, Walker TM, Peto TEA, Miller G, Lintott C, Clifton D, Crook DW, Walker AS; Zooniverse Volunteer Community; CRyPTIC Consortium. Fowler PW, et al. Elife. 2022 May 19;11:e75046. doi: 10.7554/eLife.75046. Elife. 2022. PMID: 35588296 Free PMC article.
Phenotypic characterisation of Crohn's disease severity.
Niehaus KE, Uhlig HH, Clifton DA. Niehaus KE, et al. Among authors: clifton da. Annu Int Conf IEEE Eng Med Biol Soc. 2015 Aug;2015:7023-6. doi: 10.1109/EMBC.2015.7320009. Annu Int Conf IEEE Eng Med Biol Soc. 2015. PMID: 26737909
Forecasting COVID-19 Severity by Intelligent Optical Fingerprinting of Blood Samples.
Faria SP, Carpinteiro C, Pinto V, Rodrigues SM, Alves J, Marques F, Lourenço M, Santos PH, Ramos A, Cardoso MJ, Guimarães JT, Rocha S, Sampaio P, Clifton DA, Mumtaz M, Paiva JS. Faria SP, et al. Among authors: clifton da. Diagnostics (Basel). 2021 Jul 21;11(8):1309. doi: 10.3390/diagnostics11081309. Diagnostics (Basel). 2021. PMID: 34441244 Free PMC article.
149 results