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A UIMA wrapper for the NCBO annotator.
Roeder C, Jonquet C, Shah NH, Baumgartner WA Jr, Verspoor K, Hunter L. Roeder C, et al. Bioinformatics. 2010 Jul 15;26(14):1800-1. doi: 10.1093/bioinformatics/btq250. Epub 2010 May 26. Bioinformatics. 2010. PMID: 20505005 Free PMC article.
Exploring species-based strategies for gene normalization.
Verspoor K, Roeder C, Johnson HL, Cohen KB, Baumgartner WA Jr, Hunter LE. Verspoor K, et al. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):462-71. doi: 10.1109/TCBB.2010.48. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20671318 Free PMC article.
U-Compare bio-event meta-service: compatible BioNLP event extraction services.
Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J. Kano Y, et al. BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481. BMC Bioinformatics. 2011. PMID: 22177292 Free PMC article.
Concept annotation in the CRAFT corpus.
Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA Jr, Cohen KB, Verspoor K, Blake JA, Hunter LE. Bada M, et al. BMC Bioinformatics. 2012 Jul 9;13:161. doi: 10.1186/1471-2105-13-161. BMC Bioinformatics. 2012. PMID: 22776079 Free PMC article.
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.
Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA Jr, Bada M, Palmer M, Hunter LE. Verspoor K, et al. BMC Bioinformatics. 2012 Aug 17;13:207. doi: 10.1186/1471-2105-13-207. BMC Bioinformatics. 2012. PMID: 22901054 Free PMC article.
123 results