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ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing.
Chen X, Shen Y, Draper W, Buenrostro JD, Litzenburger U, Cho SW, Satpathy AT, Carter AC, Ghosh RP, East-Seletsky A, Doudna JA, Greenleaf WJ, Liphardt JT, Chang HY. Chen X, et al. Among authors: carter ac. Nat Methods. 2016 Dec;13(12):1013-1020. doi: 10.1038/nmeth.4031. Epub 2016 Oct 17. Nat Methods. 2016. PMID: 27749837 Free PMC article.
An improved ATAC-seq protocol reduces background and enables interrogation of frozen tissues.
Corces MR, Trevino AE, Hamilton EG, Greenside PG, Sinnott-Armstrong NA, Vesuna S, Satpathy AT, Rubin AJ, Montine KS, Wu B, Kathiria A, Cho SW, Mumbach MR, Carter AC, Kasowski M, Orloff LA, Risca VI, Kundaje A, Khavari PA, Montine TJ, Greenleaf WJ, Chang HY. Corces MR, et al. Among authors: carter ac. Nat Methods. 2017 Oct;14(10):959-962. doi: 10.1038/nmeth.4396. Epub 2017 Aug 28. Nat Methods. 2017. PMID: 28846090 Free PMC article.
ATAC Primer Tool for targeted analysis of accessible chromatin.
Yost KE, Carter AC, Xu J, Litzenburger U, Chang HY. Yost KE, et al. Among authors: carter ac. Nat Methods. 2018 Apr 27;15(5):304-305. doi: 10.1038/nmeth.4663. Nat Methods. 2018. PMID: 29702633 Free PMC article. No abstract available.
Mechanistic insights in X-chromosome inactivation.
Lu Z, Carter AC, Chang HY. Lu Z, et al. Among authors: carter ac. Philos Trans R Soc Lond B Biol Sci. 2017 Nov 5;372(1733):20160356. doi: 10.1098/rstb.2016.0356. Philos Trans R Soc Lond B Biol Sci. 2017. PMID: 28947655 Free PMC article. Review.
Challenges and recommendations for epigenomics in precision health.
Carter AC, Chang HY, Church G, Dombkowski A, Ecker JR, Gil E, Giresi PG, Greely H, Greenleaf WJ, Hacohen N, He C, Hill D, Ko J, Kohane I, Kundaje A, Palmer M, Snyder MP, Tung J, Urban A, Vidal M, Wong W. Carter AC, et al. Nat Biotechnol. 2017 Dec 8;35(12):1128-1132. doi: 10.1038/nbt.4030. Nat Biotechnol. 2017. PMID: 29220033 Free PMC article. No abstract available.
Mechanoresponsive stem cells acquire neural crest fate in jaw regeneration.
Ransom RC, Carter AC, Salhotra A, Leavitt T, Marecic O, Murphy MP, Lopez ML, Wei Y, Marshall CD, Shen EZ, Jones RE, Sharir A, Klein OD, Chan CKF, Wan DC, Chang HY, Longaker MT. Ransom RC, et al. Among authors: carter ac. Nature. 2018 Nov;563(7732):514-521. doi: 10.1038/s41586-018-0650-9. Epub 2018 Oct 24. Nature. 2018. PMID: 30356216 Free PMC article.
Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element.
Cho SW, Xu J, Sun R, Mumbach MR, Carter AC, Chen YG, Yost KE, Kim J, He J, Nevins SA, Chin SF, Caldas C, Liu SJ, Horlbeck MA, Lim DA, Weissman JS, Curtis C, Chang HY. Cho SW, et al. Among authors: carter ac. Cell. 2018 May 31;173(6):1398-1412.e22. doi: 10.1016/j.cell.2018.03.068. Epub 2018 May 3. Cell. 2018. PMID: 29731168 Free PMC article.
Locus specific epigenetic modalities of random allelic expression imbalance.
Marion-Poll L, Forêt B, Zielinski D, Massip F, Attia M, Carter AC, Syx L, Chang HY, Gendrel AV, Heard E. Marion-Poll L, et al. Among authors: carter ac. Nat Commun. 2021 Sep 9;12(1):5330. doi: 10.1038/s41467-021-25630-3. Nat Commun. 2021. PMID: 34504093 Free PMC article.
150 results