Alshahrani M - Search Results

1

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants.

Hoehndorf R, Alshahrani M, Gkoutos GV, Gosline G, Groom Q, Hamann T, Kattge J, de Oliveira SM, Schmidt M, Sierra S, Smets E, Vos RA, Weiland C. Hoehndorf R, et al. Among authors: alshahrani m. J Biomed Semantics. 2016 Nov 14;7(1):65. doi: 10.1186/s13326-016-0107-8. J Biomed Semantics. 2016. PMID: 27842607 Free PMC article.

2

Neuro-symbolic representation learning on biological knowledge graphs.

Alshahrani M, Khan MA, Maddouri O, Kinjo AR, Queralt-Rosinach N, Hoehndorf R. Alshahrani M, et al. Bioinformatics. 2017 Sep 1;33(17):2723-2730. doi: 10.1093/bioinformatics/btx275. Bioinformatics. 2017. PMID: 28449114 Free PMC article.

3

Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes.

Alshahrani M, Hoehndorf R. Alshahrani M, et al. Bioinformatics. 2018 Sep 1;34(17):i901-i907. doi: 10.1093/bioinformatics/bty559. Bioinformatics. 2018. PMID: 30423077 Free PMC article.

4

Combining biomedical knowledge graphs and text to improve predictions for drug-target interactions and drug-indications.

Alshahrani M, Almansour A, Alkhaldi A, Thafar MA, Uludag M, Essack M, Hoehndorf R. Alshahrani M, et al. PeerJ. 2022 Apr 4;10:e13061. doi: 10.7717/peerj.13061. eCollection 2022. PeerJ. 2022. PMID: 35402106 Free PMC article.

5

Application and evaluation of knowledge graph embeddings in biomedical data.

Alshahrani M, Thafar MA, Essack M. Alshahrani M, et al. PeerJ Comput Sci. 2021 Feb 18;7:e341. doi: 10.7717/peerj-cs.341. eCollection 2021. PeerJ Comput Sci. 2021. PMID: 33816992 Free PMC article.

6

Affinity2Vec: drug-target binding affinity prediction through representation learning, graph mining, and machine learning.

Thafar MA, Alshahrani M, Albaradei S, Gojobori T, Essack M, Gao X. Thafar MA, et al. Among authors: alshahrani m. Sci Rep. 2022 Mar 19;12(1):4751. doi: 10.1038/s41598-022-08787-9. Sci Rep. 2022. PMID: 35306525 Free PMC article.

7

OncoRTT: Predicting novel oncology-related therapeutic targets using BERT embeddings and omics features.

Thafar MA, Albaradei S, Uludag M, Alshahrani M, Gojobori T, Essack M, Gao X. Thafar MA, et al. Among authors: alshahrani m. Front Genet. 2023 Apr 6;14:1139626. doi: 10.3389/fgene.2023.1139626. eCollection 2023. Front Genet. 2023. PMID: 37091791 Free PMC article.

8

Building predictive models for MERS-CoV infections using data mining techniques.

Al-Turaiki I, Alshahrani M, Almutairi T. Al-Turaiki I, et al. Among authors: alshahrani m. J Infect Public Health. 2016 Nov-Dec;9(6):744-748. doi: 10.1016/j.jiph.2016.09.007. Epub 2016 Sep 15. J Infect Public Health. 2016. PMID: 27641481 Free PMC article.

9

Hypertension clinical pathway: Experience of Aseer region, Saudi Arabia.

Assiri AMM, Al-Khaldi YM, Kaabi AAA, Alshehri IAM, Al-Shahrani MAS, Almalki AA. Assiri AMM, et al. J Family Community Med. 2024 Apr-Jun;31(2):116-123. doi: 10.4103/jfcm.jfcm_283_23. Epub 2024 Apr 15. J Family Community Med. 2024. PMID: 38800786 Free PMC article.

10

Prediction of Conformational Ensembles and Structural Effects of State-Switching Allosteric Mutants in the Protein Kinases Using Comparative Analysis of AlphaFold2 Adaptations with Sequence Masking and Shallow Subsampling.

Raisinghani N, Alshahrani M, Gupta G, Tian H, Xiao S, Tao P, Verkhivker G. Raisinghani N, et al. Among authors: alshahrani m. bioRxiv [Preprint]. 2024 May 18:2024.05.17.594786. doi: 10.1101/2024.05.17.594786. bioRxiv. 2024. PMID: 38798650 Free PMC article. Preprint.

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