Sankar K - Search Results

1

Structural differences and differential expression among rhabdomeric opsins reveal functional change after gene duplication in the bay scallop, Argopecten irradians (Pectinidae).

Porath-Krause AJ, Pairett AN, Faggionato D, Birla BS, Sankar K, Serb JM. Porath-Krause AJ, et al. Among authors: sankar k. BMC Evol Biol. 2016 Nov 17;16(1):250. doi: 10.1186/s12862-016-0823-9. BMC Evol Biol. 2016. PMID: 27855630 Free PMC article.

2

Altered dynamics upon oligomerization corresponds to key functional sites.

Mishra SK, Sankar K, Jernigan RL. Mishra SK, et al. Among authors: sankar k. Proteins. 2017 Aug;85(8):1422-1434. doi: 10.1002/prot.25302. Epub 2017 Apr 27. Proteins. 2017. PMID: 28383162 Free PMC article.

3

Comparisons of Protein Dynamics from Experimental Structure Ensembles, Molecular Dynamics Ensembles, and Coarse-Grained Elastic Network Models.

Sankar K, Mishra SK, Jernigan RL. Sankar K, et al. J Phys Chem B. 2018 May 31;122(21):5409-5417. doi: 10.1021/acs.jpcb.7b11668. Epub 2018 Feb 9. J Phys Chem B. 2018. PMID: 29376347

4

Structure and function of LCI1: a plasma membrane CO₂ channel in the Chlamydomonas CO₂ concentrating mechanism.

Kono A, Chou TH, Radhakrishnan A, Bolla JR, Sankar K, Shome S, Su CC, Jernigan RL, Robinson CV, Yu EW, Spalding MH. Kono A, et al. Among authors: sankar k. Plant J. 2020 Jun;102(6):1107-1126. doi: 10.1111/tpj.14745. Epub 2020 Apr 18. Plant J. 2020. PMID: 32168387 Free PMC article.

5

Knowledge-based entropies improve the identification of native protein structures.

Sankar K, Jia K, Jernigan RL. Sankar K, et al. Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2928-2933. doi: 10.1073/pnas.1613331114. Epub 2017 Mar 6. Proc Natl Acad Sci U S A. 2017. PMID: 28265078 Free PMC article.

6

Molecular determinants of cadherin ideal bond formation: Conformation-dependent unbinding on a multidimensional landscape.

Manibog K, Sankar K, Kim SA, Zhang Y, Jernigan RL, Sivasankar S. Manibog K, et al. Among authors: sankar k. Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):E5711-20. doi: 10.1073/pnas.1604012113. Epub 2016 Sep 12. Proc Natl Acad Sci U S A. 2016. PMID: 27621473 Free PMC article.

7

Distributions of experimental protein structures on coarse-grained free energy landscapes.

Sankar K, Liu J, Wang Y, Jernigan RL. Sankar K, et al. J Chem Phys. 2015 Dec 28;143(24):243153. doi: 10.1063/1.4937940. J Chem Phys. 2015. PMID: 26723638 Free PMC article.

8

Directional Force Originating from ATP Hydrolysis Drives the GroEL Conformational Change.

Liu J, Sankar K, Wang Y, Jia K, Jernigan RL. Liu J, et al. Among authors: sankar k. Biophys J. 2017 Apr 25;112(8):1561-1570. doi: 10.1016/j.bpj.2017.03.004. Biophys J. 2017. PMID: 28445748 Free PMC article.

9

DOR - a Database of Olfactory Receptors - Integrated Repository for Sequence and Secondary Structural Information of Olfactory Receptors in Selected Eukaryotic Genomes.

Nagarathnam B, Karpe SD, Harini K, Sankar K, Iftekhar M, Rajesh D, Giji S, Archunan G, Balakrishnan V, Gromiha MM, Nemoto W, Fukui K, Sowdhamini R. Nagarathnam B, et al. Among authors: sankar k. Bioinform Biol Insights. 2014 Jun 12;8:147-58. doi: 10.4137/BBI.S14858. eCollection 2014. Bioinform Biol Insights. 2014. PMID: 25002814 Free PMC article.

10

Computational Ways to Enhance Protein Inhibitor Design.

Jernigan RL, Sankar K, Jia K, Faraggi E, Kloczkowski A. Jernigan RL, et al. Among authors: sankar k. Front Mol Biosci. 2021 Feb 3;7:607323. doi: 10.3389/fmolb.2020.607323. eCollection 2020. Front Mol Biosci. 2021. PMID: 33614705 Free PMC article.

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