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AlexandrusPS: A User-Friendly Pipeline for the Automated Detection of Orthologous Gene Clusters and Subsequent Positive Selection Analysis.
Genome Biol Evol. 2023 Oct 6;15(10):evad187. doi: 10.1093/gbe/evad187.
Genome Biol Evol. 2023.
PMID: 37831426
Free PMC article.
DNA damage repair proteins across the Tree of Life.
Nischwitz E, Schoonenberg VAC, Fradera-Sola A, Dejung M, Vydzhak O, Levin M, Luke B, Butter F, Scheibe M.
Nischwitz E, et al. Among authors: schoonenberg vac.
iScience. 2023 Apr 29;26(6):106778. doi: 10.1016/j.isci.2023.106778. eCollection 2023 Jun 16.
iScience. 2023.
PMID: 37250769
Free PMC article.
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Rational targeting of a NuRD subcomplex guided by comprehensive in situ mutagenesis.
Sher F, Hossain M, Seruggia D, Schoonenberg VAC, Yao Q, Cifani P, Dassama LMK, Cole MA, Ren C, Vinjamur DS, Macias-Trevino C, Luk K, McGuckin C, Schupp PG, Canver MC, Kurita R, Nakamura Y, Fujiwara Y, Wolfe SA, Pinello L, Maeda T, Kentsis A, Orkin SH, Bauer DE.
Sher F, et al. Among authors: schoonenberg vac.
Nat Genet. 2019 Jul;51(7):1149-1159. doi: 10.1038/s41588-019-0453-4. Epub 2019 Jun 28.
Nat Genet. 2019.
PMID: 31253978
Free PMC article.
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CRISPRO: identification of functional protein coding sequences based on genome editing dense mutagenesis.
Schoonenberg VAC, Cole MA, Yao Q, Macias-Treviño C, Sher F, Schupp PG, Canver MC, Maeda T, Pinello L, Bauer DE.
Schoonenberg VAC, et al.
Genome Biol. 2018 Oct 19;19(1):169. doi: 10.1186/s13059-018-1563-5.
Genome Biol. 2018.
PMID: 30340514
Free PMC article.
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Genome-wide CRISPR-Cas9 Screen Identifies Leukemia-Specific Dependence on a Pre-mRNA Metabolic Pathway Regulated by DCPS.
Yamauchi T, Masuda T, Canver MC, Seiler M, Semba Y, Shboul M, Al-Raqad M, Maeda M, Schoonenberg VAC, Cole MA, Macias-Trevino C, Ishikawa Y, Yao Q, Nakano M, Arai F, Orkin SH, Reversade B, Buonamici S, Pinello L, Akashi K, Bauer DE, Maeda T.
Yamauchi T, et al. Among authors: schoonenberg vac.
Cancer Cell. 2018 Mar 12;33(3):386-400.e5. doi: 10.1016/j.ccell.2018.01.012. Epub 2018 Feb 22.
Cancer Cell. 2018.
PMID: 29478914
Free PMC article.
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Aberrant hepatic lipid storage and metabolism in canine portosystemic shunts.
Van den Bossche L, Schoonenberg VAC, Burgener IA, Penning LC, Schrall IM, Kruitwagen HS, van Wolferen ME, Grinwis GCM, Kummeling A, Rothuizen J, van Velzen JF, Stathonikos N, Molenaar MR, Helms BJ, Brouwers JFHM, Spee B, van Steenbeek FG.
Van den Bossche L, et al. Among authors: schoonenberg vac.
PLoS One. 2017 Oct 19;12(10):e0186491. doi: 10.1371/journal.pone.0186491. eCollection 2017.
PLoS One. 2017.
PMID: 29049355
Free PMC article.
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β-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance.
Novakovic B, Habibi E, Wang SY, Arts RJW, Davar R, Megchelenbrink W, Kim B, Kuznetsova T, Kox M, Zwaag J, Matarese F, van Heeringen SJ, Janssen-Megens EM, Sharifi N, Wang C, Keramati F, Schoonenberg V, Flicek P, Clarke L, Pickkers P, Heath S, Gut I, Netea MG, Martens JHA, Logie C, Stunnenberg HG.
Novakovic B, et al. Among authors: schoonenberg v.
Cell. 2016 Nov 17;167(5):1354-1368.e14. doi: 10.1016/j.cell.2016.09.034.
Cell. 2016.
PMID: 27863248
Free PMC article.
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