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A genome wide dosage suppressor network reveals genomic robustness.
Patra B, Kon Y, Yadav G, Sevold AW, Frumkin JP, Vallabhajosyula RR, Hintze A, Østman B, Schossau J, Bhan A, Marzolf B, Tamashiro JK, Kaur A, Baliga NS, Grayhack EJ, Adami C, Galas DJ, Raval A, Phizicky EM, Ray A. Patra B, et al. Among authors: vallabhajosyula rr. Nucleic Acids Res. 2017 Jan 9;45(1):255-270. doi: 10.1093/nar/gkw1148. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27899637 Free PMC article.
Computational modeling in systems biology.
Vallabhajosyula RR, Raval A. Vallabhajosyula RR, et al. Methods Mol Biol. 2010;662:97-120. doi: 10.1007/978-1-60761-800-3_5. Methods Mol Biol. 2010. PMID: 20824468 Review.
Identifying hubs in protein interaction networks.
Vallabhajosyula RR, Chakravarti D, Lutfeali S, Ray A, Raval A. Vallabhajosyula RR, et al. PLoS One. 2009;4(4):e5344. doi: 10.1371/journal.pone.0005344. Epub 2009 Apr 28. PLoS One. 2009. PMID: 19399170 Free PMC article.
Conservation analysis of large biochemical networks.
Vallabhajosyula RR, Chickarmane V, Sauro HM. Vallabhajosyula RR, et al. Bioinformatics. 2006 Feb 1;22(3):346-53. doi: 10.1093/bioinformatics/bti800. Epub 2005 Nov 29. Bioinformatics. 2006. PMID: 16317075
Stochastic simulation GUI for biochemical networks.
Vallabhajosyula RR, Sauro HM. Vallabhajosyula RR, et al. Bioinformatics. 2007 Jul 15;23(14):1859-61. doi: 10.1093/bioinformatics/btm231. Epub 2007 Jun 22. Bioinformatics. 2007. PMID: 17586553